| Sequence ID | dm3.chr4 |
|---|---|
| Location | 736,073 – 736,164 |
| Length | 91 |
| Max. P | 0.616417 |
| Location | 736,073 – 736,164 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 74.87 |
| Shannon entropy | 0.39030 |
| G+C content | 0.31961 |
| Mean single sequence MFE | -20.62 |
| Consensus MFE | -8.05 |
| Energy contribution | -8.17 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616417 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 736073 91 + 1351857 GAUACUUGUUUUUU-UUAUUCAGGUCAAUCAGGUC-------AGUGCAUAUAUAAUUGAAUCUCGAUGUGGUACUAGUAAAUUGGCUAAACAGGUAUCA (((((((((((...-.......(((((((...(..-------(((((.......((((.....))))...)))))..)..)))))))))))))))))). ( -24.00, z-score = -3.39, R) >droEre2.scaffold_4512 758758 98 - 1286254 GAUAUUUCUUUUUAGUUAUUCAGGUCAUUAGCGCCUCUUAUUAGCGAAUCUCAAAUCAAAU-UUGUUGUCUAUGUGGUAUUAUGGAUAAGCAGGAACAA ..............((((...((((.......)))).....))))...............(-((((((((((((......))))))).))))))..... ( -13.20, z-score = 1.07, R) >droSec1.super_30 453273 90 + 664411 GAUAUUUGUUUUUU-U-AUUCAGGUCAAUAAGGCC-------AGCGCAUAGAUAAUUUAAUCUCAAUGUGGUACUAAUAAAUUGGUUAAACAGGUAUCA (((((((((((..(-(-(....((((.....))))-------..(((((((((......))))..)))))............)))..))))))))))). ( -22.10, z-score = -3.64, R) >droSim1.chr4 563591 90 + 949497 GAUAUUUGUUUUUU-U-AUUCAGGUCAAUAAGGCC-------AGCGCAUAGAUAAUUUAAUCUCAAUGCGGUACUAAUAAAUUGGCUAAACAGGUAUCA (((((((((((.((-(-(((..((((.....))))-------..(((((((((......))))..))))).....))))))......))))))))))). ( -23.20, z-score = -3.79, R) >consensus GAUAUUUGUUUUUU_U_AUUCAGGUCAAUAAGGCC_______AGCGCAUAGAUAAUUUAAUCUCAAUGUGGUACUAAUAAAUUGGCUAAACAGGUAUCA (((((((((((...........((((.....))))...........................(((((.............)))))..))))))))))). ( -8.05 = -8.17 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:30 2011