| Sequence ID | dm3.chr4 |
|---|---|
| Location | 719,005 – 719,075 |
| Length | 70 |
| Max. P | 0.616679 |
| Location | 719,005 – 719,075 |
|---|---|
| Length | 70 |
| Sequences | 3 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 89.52 |
| Shannon entropy | 0.14430 |
| G+C content | 0.38751 |
| Mean single sequence MFE | -16.60 |
| Consensus MFE | -14.01 |
| Energy contribution | -13.90 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 719005 70 - 1351857 AAAAGAGAGUAGGAGUAAAAACUCCUACCAGCAAUGUAAGGGGUAUCUGUUAGUUACGAUCUGCGUAGCU ..((.(((((((((((....))))))))((....)).........))).))(((((((.....))))))) ( -20.30, z-score = -2.62, R) >droSec1.super_30 435693 70 - 664411 AAAAAAAAGUAUGAGUUAACACUCCUACCAGCUAUGUAACGGGUAUCUGUUAGUUACGAUCUGCAUAGCU ........(((.((((....)))).))).(((((((((....(((.(.....).)))....))))))))) ( -15.60, z-score = -1.66, R) >droSim1.chr4 545761 69 - 949497 -AAAACAAGUAUGAGUUAACACUUCUACCAGCUAUGUAACGGGUAUCUGUUAGUUACGAUCUGCAUAGCU -.......(((.((((....)))).))).(((((((((....(((.(.....).)))....))))))))) ( -13.90, z-score = -0.64, R) >consensus AAAAAAAAGUAUGAGUUAACACUCCUACCAGCUAUGUAACGGGUAUCUGUUAGUUACGAUCUGCAUAGCU ........(((.((((....)))).))).(((((((((....(((.(.....).)))....))))))))) (-14.01 = -13.90 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:23 2011