| Sequence ID | dm3.chr4 |
|---|---|
| Location | 670,062 – 670,154 |
| Length | 92 |
| Max. P | 0.515962 |
| Location | 670,062 – 670,154 |
|---|---|
| Length | 92 |
| Sequences | 13 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 81.01 |
| Shannon entropy | 0.38152 |
| G+C content | 0.31936 |
| Mean single sequence MFE | -18.73 |
| Consensus MFE | -8.40 |
| Energy contribution | -8.71 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515962 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 670062 92 - 1351857 -------UACCUGUGUUAUAUUCAU---UAGAGGAAGUUGUAA------UCGUAUUACGGU--UUUGCUUUCAUC-AAAGCAUUCCCACCG--AAAAAGUUCGGCUAUACAUU--- -------....(((((.........---..((((((((...((------(((.....))))--)..)))))).))-............(((--((....)))))..)))))..--- ( -17.80, z-score = -1.26, R) >droAna3.scaffold_13010 207212 91 - 673502 -------UACCUGUGUUAUAUUCAU---UAUAGGAAGUUCUAA------UCUUAUUACGGU--UUUGCUUUCGUU-AAAGCAUUCCCACCG---AAAAGUUCGGUUAUACAUU--- -------..((((((..........---)))))).........------.........((.--..((((((....-))))))...))((((---(.....)))))........--- ( -17.00, z-score = -1.68, R) >droEre2.scaffold_4512 688397 92 + 1286254 -------UACCUGUGUUAUAUUCAU---UAUAGGAAGUUAUAA------UCGUAUUACGGU--UUUGCUUUCAUU-AAAGCAUUCCCACCG--AAAAAGUUCGGUUAUACAUU--- -------..((((((..........---)))))).........------..((((...((.--..((((((....-))))))...))((((--((....)))))).))))...--- ( -19.70, z-score = -2.61, R) >droYak2.chr4 725980 92 - 1374474 -------UACCUGUGUUAUAUUCAU---UAUAGGAAGUUAUAA------UCGUAUUACGGU--UUUGCUUUCAAU-AAAGCAUUCCCACCG--AAAAAGUUCGGUUAUACAUU--- -------..((((((..........---)))))).........------..((((...((.--..((((((....-))))))...))((((--((....)))))).))))...--- ( -19.70, z-score = -2.59, R) >droSec1.super_30 391533 92 - 664411 -------UACCUGUGUUAUAUUCAU---UAAAGGAAGUUGUAA------UCGUAAUACGGU--UUUGCUUUCAUU-AAAGCAUUCCCACCG--AAAAAGUUCGGUUAUACAUU--- -------....(((((........(---(((.((((((...((------(((.....))))--)..)))))).))-)).........((((--((....)))))).)))))..--- ( -19.00, z-score = -2.10, R) >droSim1.chr4 514878 92 - 949497 -------UACCUGUGUUAUAUUCAU---UAGAGGAAGUUGUAA------UCGUAAUACGGU--UUUGCUUUCAUU-AAAGCAUUCCCACCG--AAAAAGUUCGGUUAUACAUU--- -------....(((((........(---(((.((((((...((------(((.....))))--)..)))))).))-)).........((((--((....)))))).)))))..--- ( -18.70, z-score = -1.72, R) >droWil1.scaffold_181130 15095261 96 + 16660200 -------AACCUGUGUUAUAUACAU---UAUAGGAAGUUAUAA------UCUUUUUACGGU--UUUGCUUUCACUAAAAGCAUUCCCACCG--AAAUGAUUCGGUUAUACAUACAU -------....(((((((((.....---..(((((((......------.))))))).((.--..((((((.....))))))...))((((--((....)))))))))).))))). ( -18.70, z-score = -2.04, R) >droMoj3.scaffold_6498 2231364 93 + 3408170 -------UACCUGUGUUAUAUACAUAUAAAUAGGAAGUUAUAA------UCA-AUUGCGGU--UUUGCUUUCACU--AAGCAUUCCCACCG--AAAAAAUUCGGUUAAACAUU--- -------..(((((.(((((....))))))))))..(((.(((------(((-(((.((((--..(((((.....--))))).....))))--....)))).))))))))...--- ( -19.60, z-score = -2.57, R) >droVir3.scaffold_13052 750119 92 + 2019633 -------UACCUGUGUUAUAUACAU---AAUAGGAAGUUAUAA------UCA-AUUACGGU--UUUGCUUUCACU-AAAGCAUUCCCACCGAAAAAAAAUUCGGUUAAACAU---- -------..(((((...........---.)))))..(((....------...-.....((.--..((((((....-))))))...))((((((......))))))..)))..---- ( -18.10, z-score = -2.53, R) >droGri2.scaffold_14822 791560 90 - 1097346 -------GACCUGUGUUAUAUACAU---AAUAGGAAGUUAUAA------UCA-AUUACGGU--UUUGCUUUCACA--AAGCAUUCCCACCG-AAAACAGUUCGGUUAUACAU---- -------..(((((...........---.))))).........------...-.....((.--..(((((.....--)))))...))((((-((.....)))))).......---- ( -16.40, z-score = -1.45, R) >droPer1.super_42 163302 92 + 623919 -------UACCUGUGUUAUAUACAU---UAUAGGAAGUUAUAA------UCUUAUUACGGU--UUUGCUUUCAUU-AAAGCAUUCCCACCG--AAAUAAUUCGGUUAUACAUU--- -------..((((((..........---))))))..((.((((------(((((((.((((--..((((((....-)))))).....))))--.)))))...))))))))...--- ( -19.50, z-score = -2.82, R) >dp4.Unknown_group_233 11438 92 - 26842 -------UACCUGUGUUAUAUACAU---UAUAGGAAGUUAUAA------UCUUAUUACGGU--UUUGCUUUCAUU-AAAGCAUUCCCACCG--AAAUAAUUCGGUUAUACAUU--- -------..((((((..........---))))))..((.((((------(((((((.((((--..((((((....-)))))).....))))--.)))))...))))))))...--- ( -19.50, z-score = -2.82, R) >triCas2.ChLG8 1699985 113 - 15773733 UCCCGAAGAUGUUUACUAUAUAAACGAAACGUUGCAUCUUUAAGAAACUUGGUCCUAUAGUCGUUAAAUUUUAUUCCAAAAAUGUUUAAU---AAAAGUUUGGAUCAAUCGUUCGG ..((((((((((..((..............)).))))))))..(((..(((((((.....(..((((((.((........)).)))))).---.)......)))))))...))))) ( -19.74, z-score = -1.03, R) >consensus _______UACCUGUGUUAUAUACAU___UAUAGGAAGUUAUAA______UCGUAUUACGGU__UUUGCUUUCAUU_AAAGCAUUCCCACCG__AAAAAGUUCGGUUAUACAUU___ .........(((((...............))))).......................((((....(((((.......))))).....))))......................... ( -8.40 = -8.71 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:21 2011