| Sequence ID | dm3.chr4 |
|---|---|
| Location | 646,687 – 646,763 |
| Length | 76 |
| Max. P | 0.689889 |
| Location | 646,687 – 646,763 |
|---|---|
| Length | 76 |
| Sequences | 5 |
| Columns | 89 |
| Reading direction | reverse |
| Mean pairwise identity | 64.21 |
| Shannon entropy | 0.57262 |
| G+C content | 0.46029 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -8.62 |
| Energy contribution | -7.94 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 646687 76 - 1351857 CUUGUGUUUGU-AAGACGUGCAUGAGUC---CACUGCAGAUGUGUGGGUGUGUGUG-----G-GGGUAUGAG---ACUAAUGUUCAUAU ((..(((.((.-....)).)))..))((---(((.(((.((......)).))))))-----)-).(((((((---.(....)))))))) ( -18.20, z-score = -0.11, R) >droSim1.chrU 391059 62 - 15797150 CUUGUGUUUGU-AAGACGUGCAUGCGUC---CACUGCAGAUGUGUGGGUGCGUGUG-----AUGUCCAUAU------------------ ...........-..(((((((((((..(---(((.((....))))))..)))))).-----))))).....------------------ ( -22.70, z-score = -2.23, R) >droSec1.super_30 369206 62 - 664411 CUUGUGUUUGU-AAGACGUGCAUGCGUC---CACUGCAGAUGUGUGGGUGCGUGUG-----AUGUCCAUAU------------------ ...........-..(((((((((((..(---(((.((....))))))..)))))).-----))))).....------------------ ( -22.70, z-score = -2.23, R) >droYak2.chr4 700534 77 - 1374474 CUUGUGUUUGUAAAGACGUGCAUGAGUC---CACUGCAGCUGUGUGGGUGCGUGUG-----G-GUAUAUGAG---AGUGUUGUUUAUAU ((..(((.(((....))).)))..))((---(((((((.((....)).)))).)))-----)-).((((...---.))))......... ( -20.80, z-score = -1.15, R) >droMoj3.scaffold_6498 1713116 88 + 3408170 CUUCUAAUCAU-AUGACGCGCACUGUUCAUAUAUUGGCUAAGUGGGAGUGCGUGUAUGUAUGUGGGUAUAAGCAAGAGAUUGUUUAUAU .......((((-((((((((((((.(((((.((.....)).))))))))))))))...)))))))((((((((((....)))))))))) ( -27.60, z-score = -2.81, R) >consensus CUUGUGUUUGU_AAGACGUGCAUGAGUC___CACUGCAGAUGUGUGGGUGCGUGUG_____GUGUCUAUAAG________UGUU_AUAU ((((((..(((....((((((((...((...(((.......))).))))))))))......)))..))))))................. ( -8.62 = -7.94 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:20 2011