| Sequence ID | dm3.chr4 |
|---|---|
| Location | 577,635 – 577,743 |
| Length | 108 |
| Max. P | 0.686685 |
| Location | 577,635 – 577,743 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 80.54 |
| Shannon entropy | 0.32629 |
| G+C content | 0.34864 |
| Mean single sequence MFE | -25.84 |
| Consensus MFE | -15.78 |
| Energy contribution | -16.66 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.686685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 577635 108 + 1351857 AAAAGCAUUGACAGGGUGUAUUGUACAUUUGCGCACAUACAUCUAUAAGUGUAUGUAUCAAUUUAUUUUUACUUAUACUAUUCUUUAUACUCUAGUCUGUGCUGUCCC- ...(((((.(((((((((((..(((....)))..((((((((......)))))))).............................)))))))).))).))))).....- ( -26.10, z-score = -2.75, R) >droYak2.chr4 636475 107 + 1374474 AAAAGCAUUGGCA--GUGCAUUGAACAUGUGUGCACAUACAUAUGCGAGUGUAUGUAUCAAUUUAUUUUUACUUAUACUAUUCUUUAUAUGCUACGUGGUGCUGUGCCC .........((((--..((((....((((((.((((((((((......)))))))).................((((........)))).))))))))))))..)))). ( -24.40, z-score = 0.38, R) >droEre2.scaffold_4512 590313 105 - 1286254 AAAAGCACUGGCAUGGUGUAUUGUACAUGUGCGCACA----UAUGCGAGUGUAUGUAUCAAUUUAUUUUUACUUAUACUAUUCUUUAUAUGCUACGCUGUGCUGUGCCC ....((((.(((((((((((.....((((((((((..----..))))((((((.(((............))).))))))......)))))).))))))))))))))).. ( -31.10, z-score = -1.93, R) >droSec1.super_30 302074 95 + 664411 AAAAACACUGACAGGGUGUAUUG--------CGCACAUACAUCUAUAAGUGUAUGUAUCAAUUUAUUUUUACUUAUACU-----UUAUACACUAGUCAGUGCUGUCCC- .....(((((((.((((((((..--------.....))))))))...((((((((........................-----.)))))))).))))))).......- ( -23.81, z-score = -2.63, R) >droSim1.chr4 459206 95 + 949497 AAAAACACUGACAGGGUGUAUUG--------CGCACAUACAUCUAUAAGUGUAUGUAUCAAUUUAUUUUUACUUAUACU-----UUAUACACUAGUCAGUGCUGUCCC- .....(((((((.((((((((..--------.....))))))))...((((((((........................-----.)))))))).))))))).......- ( -23.81, z-score = -2.63, R) >consensus AAAAGCACUGACAGGGUGUAUUG_ACAU_UGCGCACAUACAUCUAUAAGUGUAUGUAUCAAUUUAUUUUUACUUAUACUAUUCUUUAUACACUAGUCAGUGCUGUCCC_ ...(((((((((...((((.............)))).......((((((((...(((......)))...)))))))).................)))))))))...... (-15.78 = -16.66 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:15 2011