| Sequence ID | dm3.chr4 |
|---|---|
| Location | 550,652 – 550,767 |
| Length | 115 |
| Max. P | 0.529741 |
| Location | 550,652 – 550,767 |
|---|---|
| Length | 115 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 63.01 |
| Shannon entropy | 0.84063 |
| G+C content | 0.56088 |
| Mean single sequence MFE | -35.44 |
| Consensus MFE | -10.68 |
| Energy contribution | -10.93 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529741 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 550652 115 + 1351857 AACCAACACGGCUGCCUUGCAGGCUUUCCAAACAGCUGUGGCUGCAGCUGCUCUAGCUGCAGUGCAUCAAAGAUGCGCCGUUAUAAAUCCACCGACACAGGAUACCGUCGAUGAA ......((((((((((.....))).........)))))))((((((((((...))))))))))(((((...))))).............((.((((..........)))).)).. ( -37.20, z-score = -1.22, R) >droSim1.chr4 434534 115 + 949497 AACCAACACGGCUGCCCUGCAGGCUUUCCAAACAGCUGUGGCUGCAGCUGCUCUAGCUGCCGUGCAUCAAAGAUGCGCUGUUAUAAAUCCACCGAUACAGGAGACCGUCGACGAA ........(((((((...)))((.(((((.((((((....((.(((((((...))))))).))(((((...)))))))))))....(((....)))...)))))))))))..... ( -36.60, z-score = -0.94, R) >droSec1.super_30 277095 115 + 664411 AACCAACACGGCUGCCCUGCGGGCUUUCCAAACAGCUGUGGCUGCAGCUGCUCUAGCUGCCGUGCAUCAAAGAUGCGCUGUUAUAAAUCCACCGAUACAGGAGACCGUCGAUGAA ......((((((.((((...))))(((((.((((((....((.(((((((...))))))).))(((((...)))))))))))....(((....)))...)))))..)))).)).. ( -38.90, z-score = -1.34, R) >droYak2.chr4 606982 106 + 1374474 AACAAACACGGCUGCUCUGCAGGCUUUUCAAACAGCUGUGGCAGCAGCUGCUCUAGCUGCAGUGCAUCAACGAUGCGCUGCUAUAAAUCCACCGA---------CCGUAGAGGAA ........(((((((((..(((.((........)))))..).))))))))(((((...((((((((((...))))))))))......((....))---------...)))))... ( -40.20, z-score = -2.11, R) >droEre2.scaffold_4512 560967 106 - 1286254 AACCAAUACGGCUGCUCUGCAGGCUUUCCAAACAGCUGUAGCAGCAGCUGCUCUAGCUGCAGUGCAUCAAAGAUGCGCUGCUAUAAAUCCACCGA---------CCGUCGAGGAA ........((((((((((((((.((........)))))))).))))))))........((((((((((...))))))))))......(((..((.---------....)).))). ( -41.10, z-score = -2.80, R) >droAna3.scaffold_12947 258235 107 + 1574637 AACAAACACGGCCGCACUUCAAGCUUUCCAAAAUGCUGUAGCCGCAGCUGCUAUAGCAGUCGUGCAGCAACAGUGCAACUCAAUUAACCAAGGGCCUU----CAGUGUCAG---- .....(((((((((((((....(((...((...(((((((((.......)))))))))....)).)))...)))))..((..........))))))..----..))))...---- ( -29.90, z-score = -0.96, R) >dp4.Unknown_group_78 56555 103 - 77267 AACAAACACGGCGGCUCUGCAAGCCUUCCAAACUGCGGUUGCAGCCGCAGCCAUAGCAGCGGUCCAACAACGCUGUAGUGCCAUCAACAUGCCUAGAGAAGCA------------ ..........((..(((((((...........(((((((....))))))).(((.((((((.........)))))).))).........)))..))))..)).------------ ( -33.10, z-score = -0.57, R) >droPer1.super_42 272533 103 - 623919 AACAAACACGGCGGCUCUGCAAGCCUUCCAAACUGCGGUUGCAGCCGCAGCCAUAGCAGCGGUCCAACAACGCUGUAGUGCCAUCAACAUGCCUAGAGAAGCA------------ ..........((..(((((((...........(((((((....))))))).(((.((((((.........)))))).))).........)))..))))..)).------------ ( -33.10, z-score = -0.57, R) >droWil1.scaffold_181130 15237181 106 - 16660200 CACGAACACAGCUGCCCUACAAGCUUUCCAGACAGCCGUUGCAGCCGCCGCCCUCGCAGCCGUACAGCGGUGCGGAGGUGCCAUCAGUAUUCCUUCCAACGAAGCG--------- ...(((.((.(((((...((..(((........))).)).))))).(.((((..((((.(((.....)))))))..)))).)....)).)))((((....))))..--------- ( -31.70, z-score = -0.61, R) >droMoj3.scaffold_6498 2357508 109 - 3408170 GACAAACACGGCUGCGCUGCAAGCCUUUCAAACAGCUAUCGCAGCUGCUGCUCUAGCUGCCGUCCAGCGCUG------UAGCGUCACACCCUCUUCGACGCCAACUCCAACGCCC .........(((.((((((..(((..........)))...(((((((......)))))))....))))))..------..(((((...........)))))..........))). ( -32.20, z-score = -1.32, R) >droGri2.scaffold_14822 960984 103 + 1097346 AACGAACACAGCAGCGCUACAAGCAUUCCAAACAGCUGUGGCAGCGGCGACAAUGGCAGCCGUCCAACGUUGCACCA-UACCGGGAACAGGAGUUGUACCGGGA----------- ..........(((((((((((.((..........)))))))).(((((..(....)..))))).....)))))....-..((((..((((...)))).))))..----------- ( -32.80, z-score = -0.64, R) >droVir3.scaffold_13052 877894 112 - 2019633 CACAAACACGGCGGCACUGCAAGCUUUUCAGACAGCCGUCGCAGCCGCUGCCCUGGCUGCUGUCCAUCGCUGCAAUGCUAGUGCCACGCCCACAUCGACAGCUGCUGAAGUG--- .........(((((((((((((((....(((.((((((..((((...))))..)))))))))......)))....))).))))))..)))(((.(((.(....).))).)))--- ( -38.50, z-score = 0.18, R) >consensus AACAAACACGGCUGCCCUGCAAGCUUUCCAAACAGCUGUGGCAGCAGCUGCUCUAGCUGCCGUGCAUCAAAGAUGCGCUGCUAUAAAUCCACCGACAAAGGAAACCGUCGA____ .......((.((.((.......))........(((((((....)))))))........)).)).................................................... (-10.68 = -10.93 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:12 2011