| Sequence ID | dm3.chr4 |
|---|---|
| Location | 527,620 – 527,720 |
| Length | 100 |
| Max. P | 0.701719 |
| Location | 527,620 – 527,720 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 78.28 |
| Shannon entropy | 0.39367 |
| G+C content | 0.49568 |
| Mean single sequence MFE | -26.98 |
| Consensus MFE | -16.89 |
| Energy contribution | -17.85 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 527620 100 + 1351857 GGCCCUUUUCGGAGAGGGCCGAAAAUAUGCAGAAAGGAGACACCAUCAUCAUAUUCUGGGGCUGACGAGACGCCGAGAUACAGUCAGUAGCGAAGCCAAG ((((((((....)))))))).........(((((..((((.....)).))...))))).((((..((..((..(........)...))..)).))))... ( -27.60, z-score = -0.92, R) >droSec1.super_30 254167 100 + 664411 GGCCCUUUUCGGAGAGGGCCGAAAAUAUGCAGAAAGGAGACACCAUCAUCAUAUUCUGGGGCUGACGAGACGCCGAGAUACAGUCAGUAGCGAAGCCAAG ((((((((....)))))))).........(((((..((((.....)).))...))))).((((..((..((..(........)...))..)).))))... ( -27.60, z-score = -0.92, R) >droYak2.chr4 580304 100 + 1374474 GGCCCUUUUUGGAGAGGGCCGAGAAUAUGCAGAAAGGAGACACCAUCAUCAUAUUCUGGGGCUGACGAGACGCCGAGAUACAGUCAGUGGCGAAGCCAAG ((((((((....)))))))).((((((((..((..(....)....))..))))))))..((((.......(((((.(((...)))..))))).))))... ( -33.50, z-score = -2.35, R) >droEre2.scaffold_4512 532875 94 - 1286254 GGCCCUUUUUGGAGAGGGCCGAGAAUAUGCAGAAAGGAGACACCAUCAUCAUAUUC------UGACGAGACGCCGAGAUACAGUCGGUAGCGAAGCCAAG ((((((((....)))))))).((((((((..((..(....)....))..)))))))------)..((....(((((.......)))))..))........ ( -28.50, z-score = -2.46, R) >droAna3.scaffold_12947 215434 98 + 1574637 GGGCUCAGUUAGAAAAGUCUGAAAAUAUGCAGAAAAGAGACACAUUCAACGUCGGUUUCAA-UAGC-AGAUUCAGAUAAGUUUUUUAUAUGAAGGAGAAG ....(((..((((((((((((((....(((.((((...(((.........)))..))))..-..))-)..)))))))...)))))))..)))........ ( -17.70, z-score = -0.95, R) >consensus GGCCCUUUUUGGAGAGGGCCGAAAAUAUGCAGAAAGGAGACACCAUCAUCAUAUUCUGGGGCUGACGAGACGCCGAGAUACAGUCAGUAGCGAAGCCAAG (((((((......))))))).((((((((..((..(....)....))..))))))))...((((((................))))))............ (-16.89 = -17.85 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:11 2011