| Sequence ID | dm3.chr4 |
|---|---|
| Location | 498,458 – 498,550 |
| Length | 92 |
| Max. P | 0.527727 |
| Location | 498,458 – 498,550 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 54.35 |
| Shannon entropy | 0.65139 |
| G+C content | 0.42710 |
| Mean single sequence MFE | -18.43 |
| Consensus MFE | -5.56 |
| Energy contribution | -4.57 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.70 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527727 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 498458 92 + 1351857 GUUUUAUCGUUUGUUACUGUCCCAGUCCUCUGUAUCUGCUUAUUAGCAAUUUCUGGUGAAUUAUGUUUUUUUAUUUGGGACUUGUAAUGCUG ............(((((.(((((((...........((((....))))..(((....)))..............)))))))..))))).... ( -17.80, z-score = -2.39, R) >droYak2.chr4 546940 92 + 1374474 GUAUUUUCGUGUGUUACGGUCCCAGGCCUCUGUGCCUGCUUAUUUGUUAUCUCAGGUGAAUUAUAUUUUUUUAUGUGAGACUUUUGAUGCUG (((((.....((.(((((....(((((......))))).(((((((......)))))))..............))))).))....))))).. ( -19.80, z-score = -1.68, R) >droWil1.scaffold_181130 15168329 83 - 16660200 ---CUCUUUUCUACAUCCGACUGUAGCGCCUUACCCUCGACAUUAGCUGCUGCCGGUGAAUUCGUCCGUUUUGCCUGCUGCUGCUG------ ---.......(((((......))))).................((((.((.((.((..((.........))..)).)).)).))))------ ( -17.70, z-score = -0.98, R) >consensus GU_UUAUCGUCUGUUACCGUCCCAGGCCUCUGUACCUGCUUAUUAGCUAUUUCAGGUGAAUUAUAUUUUUUUAUCUGAGACUUCUGAUGCUG .................................................((((.((((((.........)))))).))))............ ( -5.56 = -4.57 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:10 2011