| Sequence ID | dm3.chr4 |
|---|---|
| Location | 479,805 – 479,871 |
| Length | 66 |
| Max. P | 0.950950 |
| Location | 479,805 – 479,871 |
|---|---|
| Length | 66 |
| Sequences | 3 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 50.78 |
| Shannon entropy | 0.68290 |
| G+C content | 0.38566 |
| Mean single sequence MFE | -14.83 |
| Consensus MFE | -5.62 |
| Energy contribution | -5.30 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.73 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.950950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 479805 66 - 1351857 GAGUAACGGGUAUAUGAUAGUUGGGAAAGUCGGCUAUAACAUUCUUUCUUGUUUUUGUAUGCACAU .........(((((..(....((((((((...(......)...))))))))...)..))))).... ( -11.50, z-score = -0.36, R) >droAna3.scaffold_13230 558747 59 + 3602488 --GUACCGAGUAUAAUAUAGUCGGGAAGCUCGGGUAAAGCUGUCCUUUCUGUUUUUAUAUU----- --......(((((((.((((..((((((((.......)))).))))..))))..)))))))----- ( -14.00, z-score = -1.53, R) >droGri2.scaffold_15110 372203 57 - 24565398 GAUUACAGGGCAUAUUGUAGUCGACUACAACAUUCUUACUUGUUGUUGUGGUUGCUG--------- ((((((((......))))))))((((((((((..(......).))))))))))....--------- ( -19.00, z-score = -3.53, R) >consensus GAGUACCGGGUAUAUUAUAGUCGGGAAAAUCGGCUAUAACUGUCCUUCUUGUUUUUGUAU______ ................((((.((((((((.(((......))).))))))))...))))........ ( -5.62 = -5.30 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:08 2011