| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,394,701 – 9,394,806 |
| Length | 105 |
| Max. P | 0.915785 |
| Location | 9,394,701 – 9,394,806 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 50.00 |
| Shannon entropy | 0.72279 |
| G+C content | 0.42648 |
| Mean single sequence MFE | -28.47 |
| Consensus MFE | -9.27 |
| Energy contribution | -8.97 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.915785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9394701 105 - 23011544 -ACAAGGAGUAUGCAGUAGGUGCCUUUCUUGAUAUUCAACAGGCUUUUGACAGAGUCUGGCACCCUGGGCUCCUGUACAAAGCGAAGAGGCUGUUCCCGCCGCAGC--- -(((.(((((...(((..((((((....(((.....))).((((((......))))))))))))))).)))))))).....(((..(.((.....)))..)))...--- ( -32.60, z-score = 0.06, R) >anoGam1.chr3R 12670277 109 + 53272125 GUGAGCAAGUCCACCAUGGUCGCAAUGUUGGAUGUUGAAAAGGCAUUUGACAAUGUUUGGCAUGAUGGACUUGUUCAUAAACUUGUCACCUUUGGCAUUCCUAUGUAUC (((((((((((((.((((.(.(((.(((..((((((.....))))))..))).)))..).)))).))))))))))))).....(((((....)))))............ ( -41.70, z-score = -4.33, R) >triCas2.singleUn_1324 1958 108 + 6015 -AUAACAAAAUUUCCACUCUCAUAUCUCUUGACAUCGAAAAAGCCUUUGAUACCGUUUGGCAUCAAGGCCUUAUUAUCAAACUAUUAAAAUUUAAAAUACCCCACUAUC -.........((((.....(((.......)))....))))..(((((.(((.((....)).))))))))........................................ ( -11.10, z-score = -1.13, R) >consensus _ACAACAAGUAUACCAUAGUCGCAUUUCUUGAUAUUGAAAAGGCAUUUGACAAAGUUUGGCAUCAUGGACUUAUUAACAAACUAAUAAAAUUUAACAUACCCCAGUAUC .(((((((((((((((............)))...........(((...(((...))).)))....))))))))))))................................ ( -9.27 = -8.97 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:10 2011