| Sequence ID | dm3.chr4 |
|---|---|
| Location | 451,048 – 451,146 |
| Length | 98 |
| Max. P | 0.861478 |
| Location | 451,048 – 451,146 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.85 |
| Shannon entropy | 0.26586 |
| G+C content | 0.34301 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -21.23 |
| Energy contribution | -21.90 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.861478 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 451048 98 - 1351857 AGCCGAUACCAGUUUAUUUCCUUCUGAACUGUUCGGUGAUUAUUAAAA--------------------AUUA-UUGGGACAAUGAUUGAUGAAUUUUCAUGACCGUUUCUUAACGUACA .(((((...(((((((........))))))).)))))((..(((...(--------------------((((-(((...))))))))....)))..)).((..((((....))))..)) ( -20.60, z-score = -1.45, R) >droSec1.super_30 181909 117 - 664411 AGCCGAUACCAGUUUGUUUUCUUCUGAACUGUUCGGUGUAUAUUAAAAAAACCACGGAUAAAUACAGUAUUAUUUGGGACAAUGAUUGAUGA--CUUCAUAGUUGUUCCUUAACGUACA .(((((...(((((((........))))))).)))))(((..((((.........((((((........))))))((((((((...(((...--..)))..))))))))))))..))). ( -27.70, z-score = -1.83, R) >droSim1.chr4 352992 117 - 949497 AGCCGAUACCAGUUUGUUUUCUUCUGAACUGUUCGGUGUAUAUUAAAAAACCCACGGAUUAAUACAGUAUUAUUUGGGACAAUGAUUGAUGA--CUUCAUAGUUGUUCCUUAACGUACA .(((((...(((((((........))))))).)))))(((..((((....((...))..................((((((((...(((...--..)))..))))))))))))..))). ( -26.60, z-score = -1.44, R) >consensus AGCCGAUACCAGUUUGUUUUCUUCUGAACUGUUCGGUGUAUAUUAAAAAA_CCACGGAU_AAUACAGUAUUAUUUGGGACAAUGAUUGAUGA__CUUCAUAGUUGUUCCUUAACGUACA .(((((...(((((((........))))))).))))).............................((((.....((((((((...(((.......)))..)))))))).....)))). (-21.23 = -21.90 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:07 2011