| Sequence ID | dm3.chr4 |
|---|---|
| Location | 446,885 – 447,000 |
| Length | 115 |
| Max. P | 0.565099 |
| Location | 446,885 – 447,000 |
|---|---|
| Length | 115 |
| Sequences | 9 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 78.08 |
| Shannon entropy | 0.43020 |
| G+C content | 0.42929 |
| Mean single sequence MFE | -21.39 |
| Consensus MFE | -11.63 |
| Energy contribution | -10.81 |
| Covariance contribution | -0.82 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 446885 115 + 1351857 CGCAACUCAAUUCUAACGUCCAUUUCCACCCC-CAUGCCGACUUGGCCCAGAAUUGCGUUUUGUUUUAUUACGCGAGCAUUUUCUUUCAUUAAUAGCCGCGAGGCAUUAAAUUUUU ((((((.(((((((...(.(((..((......-......))..))))..))))))).)))..((......)))))..............(((((.(((....))))))))...... ( -22.20, z-score = -1.41, R) >droSec1.super_30 178045 115 + 664411 CGCUACUCAAUUCUAAGGUCCAUUUCCACCCC-CAUGCCGACUUGGCCCAGAAUUGCGUUUUGUUUUAUUACGCGAGCAUUUUCUUUCAUUAAUAGCCGCGAGGCAUUAAAUUUUU .(((....((((((..((.(((..((......-......))..))))).))))))((((...........)))).)))...........(((((.(((....))))))))...... ( -24.60, z-score = -1.70, R) >droSim1.chr4 349486 115 + 949497 CGCUACUCAAUUCUAAGGUCCAUUUCCACCCC-CAUGCCGACUUGGCCCAGAAUUGCGUUUUGUUUUAUUACGCGAGCAUUUUCUUUCAUUAAUAGCCGCGAGGCAUUAAAUUUUU .(((....((((((..((.(((..((......-......))..))))).))))))((((...........)))).)))...........(((((.(((....))))))))...... ( -24.60, z-score = -1.70, R) >droYak2.chr4 499512 115 + 1374474 CGCGACUCAAUUCUAAAGUCCAUUUCCACCCC-CAUGCCGACUUGGCCCAGAAUUGCGUUUUGUUUUAUUACGCGAGCAUUUUCUUUCAUUAAUAGCCGCGAGGCAUUAAAUUUUU ((((((.(((((((.((((((((.........-.)))..))))).....))))))).)))..((......)))))..............(((((.(((....))))))))...... ( -22.70, z-score = -1.19, R) >droEre2.scaffold_4512 445169 115 - 1286254 AGCAACUCAAUUCUAAGGUCCAUUUCCACCCC-CAUGCCGACUUGGCCCAGAAUUGCGUUUUGUUUUAUUACGCGAGCAUUUUCUUUCAUUAAUAGCCGCGAGGCAUUAAAUUUUU .(((((.(((((((..((.(((..((......-......))..))))).))))))).)))((((........))))))...........(((((.(((....))))))))...... ( -24.60, z-score = -1.77, R) >droAna3.scaffold_13034 87129 101 - 2223656 ------------CCCCUUUUCACUC---CAACAUGUAUUCCCUAGGUCCAUAAUGCCGCUUUGUUUUAUUACGAGAGCAUUUUCGUUCAUUAAUAGCCGCGAGGUAUUAAAUUUUU ------------..(((....((..---......)).......)))....((((((((((((((......)).)))))....((((............)))))))))))....... ( -14.60, z-score = -0.58, R) >dp4.Unknown_group_1 123761 104 + 174220 ------------GGCAGUGGCACUCUCACCACCCUUCUUCCCUUGAUCCACAAUGCCGUUUUGUUUUAUUACGCAAGCAUUUUCCUCCAUUAAUAGCCGCGAGGCAUUAAAUUUUU ------------((((((((........))))...((.......)).......))))(((((((......))).))))...........(((((.(((....))))))))...... ( -20.80, z-score = -1.90, R) >droPer1.super_42 244205 104 + 623919 ------------GGCAGUGGCACUCUCACCACCCUUCUUCCCUUGGUCCACAAUGCCGUUUUGUUUUAUUACGCAAGCAUUUUCCUCCAUUAAUAGCCGCGAGGCAUUAAAUUUUU ------------((((((((.......((((............))))))))..))))(((((((......))).))))...........(((((.(((....))))))))...... ( -22.21, z-score = -1.72, R) >droWil1.scaffold_181130 14770342 104 - 16660200 -----------UCCCCCUCACACCUUCACCAC-CGACCUGUCGUAGUCCUCAAUGCCGUUUUGUUUUAUUACGCGAGCAUUUUCCACCAUUAAUAGCCGCGAGGCAUUAAAUUUUU -----------.....................-(((....)))........((((((((...((......))))).)))))........(((((.(((....))))))))...... ( -16.20, z-score = -1.68, R) >consensus _GC_ACUCAAUUCUAAGGUCCAUUUCCACCCC_CAUGCCGACUUGGCCCAGAAUUGCGUUUUGUUUUAUUACGCGAGCAUUUUCUUUCAUUAAUAGCCGCGAGGCAUUAAAUUUUU ....................................(((.....)))..........(((((((......))).))))...........(((((.(((....))))))))...... (-11.63 = -10.81 + -0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:06 2011