| Sequence ID | dm3.chr4 |
|---|---|
| Location | 394,393 – 394,460 |
| Length | 67 |
| Max. P | 0.720229 |
| Location | 394,393 – 394,460 |
|---|---|
| Length | 67 |
| Sequences | 3 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 65.83 |
| Shannon entropy | 0.47220 |
| G+C content | 0.50979 |
| Mean single sequence MFE | -17.00 |
| Consensus MFE | -12.02 |
| Energy contribution | -10.93 |
| Covariance contribution | -1.09 |
| Combinations/Pair | 1.63 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 394393 67 - 1351857 UUUGCGAAAAUGUGGGCGUGUCAGUUUUGGGCGGCUUGUGGGCGUUAGAAUGGGCGAGACAACAUGG .........((((.(...((((.(((((((.((.(.....).))))))))).))))...).)))).. ( -13.70, z-score = 0.79, R) >dp4.Unknown_group_801 667 65 - 4268 --UUUAAAAUUGUGGAUGGCACAGUUUUUCGUCCUUUCUGGGGGCGGAAGUGGGCGGGGCGAAGUUU --....((((((((.....))))))))((((((((.(((....((....))))).)))))))).... ( -20.90, z-score = -2.32, R) >droPer1.super_26 1218349 64 + 1349181 --UUUAAAAAUGUGGAUGCCACAGAUUUUCGUUCUUUGUGGGGGCGGAAGUGGGC-GGGCGAAGUUU --..............((((.(..(((((((((((.....)))))))))))..).-.))))...... ( -16.40, z-score = -1.15, R) >consensus __UUUAAAAAUGUGGAUGCCACAGUUUUUCGUCCUUUGUGGGGGCGGAAGUGGGCGGGGCGAAGUUU ..........(((...((((.((..((((((((((.....))))))))))))))))..)))...... (-12.02 = -10.93 + -1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:06 2011