| Sequence ID | dm3.chr4 |
|---|---|
| Location | 342,337 – 342,436 |
| Length | 99 |
| Max. P | 0.736651 |
| Location | 342,337 – 342,436 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 89.90 |
| Shannon entropy | 0.16389 |
| G+C content | 0.42929 |
| Mean single sequence MFE | -24.50 |
| Consensus MFE | -20.50 |
| Energy contribution | -19.75 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736651 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 342337 99 - 1351857 CUACCUAGACGUCUGGAUUUAUGACGUUCUCAAAAUGCAUUGCGACGUCUUCGUCGCGGCUAGCUAUUUCUUGUAAUUCUUCCGCGUUAAUAUUGAGCC .......((((((.........))))))((((((((((...((((((....))))))((..((..(((......))).)).)))))))....))))).. ( -24.90, z-score = -1.61, R) >droSim1.chrU 9368820 99 - 15797150 CUACCUAGACGUCUGGAUUUAUGACGUUCUCAAAAUGCAUUGCGACGUCUUCGUCGCGGCUAGCUAUUUCUUGUAAUUCUUCCGCGUUAAUAUUGAGCC .......((((((.........))))))((((((((((...((((((....))))))((..((..(((......))).)).)))))))....))))).. ( -24.90, z-score = -1.61, R) >droSec1.super_101 43397 99 - 94122 CUACCUAGACGUCUGGAUUUAUGACGUUCUCAAAAUGCAUUGCGACGUCUUCGUCGCGGCUAGCUAUUUCUUGUAAUUCUUCCGCGUUAAUAUUGAGCC .......((((((.........))))))((((((((((...((((((....))))))((..((..(((......))).)).)))))))....))))).. ( -24.90, z-score = -1.61, R) >droYak2.chrU 21800058 99 - 28119190 UUACUUAAACGUCUGGGUUUAUGACGUUUUCAAAAUGUCAUUCAACGUCUUUGUCGAGGCGAGCUAUUUCUUGCAAUUCUUCUACGUUUAUGGUAAGCC ((((((((((((..(((((.((((((((.....))))))))....((((((....)))))).((........)))))))....))))))).)))))... ( -23.30, z-score = -2.07, R) >consensus CUACCUAGACGUCUGGAUUUAUGACGUUCUCAAAAUGCAUUGCGACGUCUUCGUCGCGGCUAGCUAUUUCUUGUAAUUCUUCCGCGUUAAUAUUGAGCC .......((((((.........))))))((((((((((..(((((((....)))))))....((........)).........)))))....))))).. (-20.50 = -19.75 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:05 2011