| Sequence ID | dm3.chr4 |
|---|---|
| Location | 314,305 – 314,359 |
| Length | 54 |
| Max. P | 0.610894 |
| Location | 314,305 – 314,359 |
|---|---|
| Length | 54 |
| Sequences | 6 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 70.43 |
| Shannon entropy | 0.56579 |
| G+C content | 0.37250 |
| Mean single sequence MFE | -10.85 |
| Consensus MFE | -4.00 |
| Energy contribution | -4.03 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.610894 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 314305 54 - 1351857 ACGAGUGUUUCUGAGAUUGAACCGUUCAAUCCAGAAAUAAAAAUUCUAAGAACG- .....((((((((.((((((.....))))))))))))))...............- ( -14.40, z-score = -3.61, R) >droSec1.super_81 40379 55 - 123496 AAGAGUGUUUCUGAAAUUGAACCGUUCAAUCCAGAAAUAAAAAUUCUCCUAAUUG .((((((((((((..(((((.....))))).)))))))....)))))........ ( -9.70, z-score = -2.74, R) >droYak2.chr2h_random 1809872 54 - 3774259 AAUAGUGUUUCUGAGAUUGAACCGUUCAAUCCAGAAAUAAAAUUUCUAAGAGCG- .....((((((((.((((((.....))))))))))))))...............- ( -14.40, z-score = -4.16, R) >droEre2.scaffold_4929 4378373 54 + 26641161 UAUAGAGUGGCUGAUAUUGGGCCGUUCAGGCCGGUUAUGAAAACUCCUAAGGCG- ....((((...(.(((.(.((((.....)))).).))).)..))))........- ( -13.80, z-score = -0.34, R) >droAna3.scaffold_13010 553434 54 + 673502 AAUAGGGUUUCUGAGAUUGAUCCGUUCAAACCUGAGAUAAAGAUUCUUAAUGCG- ...(((((((((.((.((((.....))))..)).)))....)))))).......- ( -6.90, z-score = 0.65, R) >droVir3.scaffold_12970 756748 54 - 11907090 AACAAAACUUCUGAUAAAGAACCGUUAAGACCUGUGAUGGAGAUUCUUAAAGCG- ................(((((((((((.......))))))...)))))......- ( -5.90, z-score = -0.05, R) >consensus AAUAGUGUUUCUGAGAUUGAACCGUUCAAUCCAGAAAUAAAAAUUCUUAAAGCG_ ......(((((((...((((.....))))..)))))))................. ( -4.00 = -4.03 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:04 2011