| Sequence ID | dm3.chr4 |
|---|---|
| Location | 23,764 – 23,853 |
| Length | 89 |
| Max. P | 0.878242 |
| Location | 23,764 – 23,853 |
|---|---|
| Length | 89 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 53.90 |
| Shannon entropy | 0.66027 |
| G+C content | 0.58188 |
| Mean single sequence MFE | -28.97 |
| Consensus MFE | -9.56 |
| Energy contribution | -8.90 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 23764 89 + 1351857 UCCCAUGGGCUUGUUGAUGCCC-AAUAUCCCAUCGUAGAUGAUGUUCCACAGGAUUGGUACAAGUACCGAUCCUUAGGGAGCACCUGCCG .....(((((........))))-)..........((((....((((((..((((((((((....))))))))))...)))))).)))).. ( -35.10, z-score = -3.87, R) >droGri2.scaffold_15203 6112327 76 - 11997470 -ACCCUGAGGCAGCUGAAGCCUGAGUACCUCG-------------UCCACAGCAGUGGACCUACAACCGACCCCUGUGGAACUCCUGCUG -...((.((((.......)))).)).......-------------....((((((..(..(((((.........)))))..)..)))))) ( -22.00, z-score = -0.98, R) >triCas2.chrUn_323 7916 85 - 36830 GCCAACGGGAACGUCGAGAUGU-AGCACCUCGUCGUAAACGAAAUUCCAGAGGAGCGGGCCCAGUACCGACCCCUGGGGCACUCCG---- (((..((...(((.((((.((.-..)).)))).)))...)).....((((.((..(((........)))..)))))))))......---- ( -29.80, z-score = -0.93, R) >consensus _CCCAUGGGAAAGUUGAAGCCU_AGUACCUCGUCGUA_A_GA__UUCCACAGGAGUGGACCAAGUACCGACCCCUGGGGAACUCCUGC_G ....(((((...(((........)))..)))))............(((..(((..(((........)))...)))..))).......... ( -9.56 = -8.90 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:57 2011