| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,890,893 – 27,890,983 |
| Length | 90 |
| Max. P | 0.968928 |
| Location | 27,890,893 – 27,890,983 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 78.85 |
| Shannon entropy | 0.40262 |
| G+C content | 0.36685 |
| Mean single sequence MFE | -24.15 |
| Consensus MFE | -14.55 |
| Energy contribution | -14.67 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.54 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.968928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27890893 90 + 27905053 UAUUGUUGCUCUAAUUAUGAAAGCGUGUCUGUGUGUGAUCAAAUGUACAUAAAUACAUAUGCAUUAAAGUCUCAAUU-GGGACUUGCAACG ....(((((.............((((((...((((((........)))))).....))))))....(((((((....-)))))))))))). ( -24.10, z-score = -2.81, R) >droSim1.chr3R 27504076 90 + 27517382 UAUUGUUGUUCUAAUUAUGAAAGCGUGUCUGUGUGUGAUCAAAUGUACAUACAUACAUAUGCAUUUAAGUUUCAAUU-GGGACUUGCAACG ....(((((.............((((((.((((((((..(....)..)))))))).))))))....((((..(....-)..))))))))). ( -24.60, z-score = -2.39, R) >droSec1.super_31 541798 90 + 568655 UAUUGUUGUUCUAAUUAUGAAAGCGUGUCUGUGUGUGAUCAAAUGUACAUACAUACAUAUGCAUUAAAGUUUCAAUU-GGGACUUGCAACG ....(((((.............((((((.((((((((..(....)..)))))))).))))))....((((..(....-)..))))))))). ( -24.70, z-score = -2.47, R) >droYak2.chr3R 28819315 85 + 28832112 UAUUGCGGUUCUAAUUAUAAAAGCGUGUCUGUGUGUGAUCAAGU----GUACAUACAU-UGCAUUAAAGUUUGAAUU-GGGACUCGCAACG ..((((((((((((((....((((((((.((((((((.......----.)))))))).-.))))....)))).))))-))))).))))).. ( -26.00, z-score = -3.15, R) >droEre2.scaffold_4820 10417275 87 - 10470090 UAUUGCGGUUCUAAUUAUGAAGGCGUGUCUGUGUGUGAUCAAAU----AUGCAUACAUAUGCAUUCAAGUUUCAAUUAGGGACUUGCAACG ..((((............(((.((((((.((((((((......)----))))))).)))))).)))((((..(.....)..)))))))).. ( -23.20, z-score = -1.79, R) >droPer1.super_0 6699417 76 - 11822988 CAGUGUUGUUGUAAUUAUGAAAGCGUGCAUAUGCAUCGGUGUAU--------GUGUGUGUGCAUUGGAGCU-------GGAAUUUGCAACG .......(((((((.......(((((((((((((((........--------))))))))))))....)))-------.....))))))). ( -22.30, z-score = -1.17, R) >consensus UAUUGUUGUUCUAAUUAUGAAAGCGUGUCUGUGUGUGAUCAAAU____AUACAUACAUAUGCAUUAAAGUUUCAAUU_GGGACUUGCAACG ....(((((...............((((.((((((((..............)))))))).))))..(((((((.....)))))))))))). (-14.55 = -14.67 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:56 2011