Locus 12378

Sequence ID dm3.chr3R
Location 27,851,656 – 27,851,747
Length 91
Max. P 0.996349
window17007

overview

Window 7

Location 27,851,656 – 27,851,747
Length 91
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 79.94
Shannon entropy 0.27630
G+C content 0.29583
Mean single sequence MFE -24.69
Consensus MFE -19.44
Energy contribution -22.33
Covariance contribution 2.89
Combinations/Pair 1.06
Mean z-score -3.12
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.92
SVM RNA-class probability 0.996349
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 27851656 91 + 27905053
UUUAAAGUUUAAUGGAUGCGCUUACAAUUAUGUAGAUCAAAAACCGAUCUAUGUUAAUAUUUCUUUUAAUUGUGGUCUUUUUGCU-CGAUUC---------------------
..........(((.((.(((((.(((((((((((((((.......))))))))).............)))))))))......)))-).))).--------------------- ( -12.21, z-score =   0.04, R)
>droSec1.super_31 501828 113 + 568655
UUUAAAGUUUGAUGCAUGAGCUUACAAUUAUGUAGGUCAAAAACCGAUCUAAGUCAAUAUUUCUUUUAAUUGUGGGCUUUUCGCAACGAACUUUAUUUAUUGUAUUUUCAACC
..(((((((((.(((..(((((((((((((..((((((.......))))))...............)))))))))))))...))).))))))))).................. ( -30.93, z-score =  -4.70, R)
>droSim1.chr3R 27463946 113 + 27517382
UUUAAAGUUUGAUGCAUGAGCUUACAAUUAUGUAGGUCAAAAACCGAUCUAAGUCAAUAUUUCUUUUAAUUGUGGGCUUUUCGCAACGAACUUUAUUUAUUGUAUUUUCAACC
..(((((((((.(((..(((((((((((((..((((((.......))))))...............)))))))))))))...))).))))))))).................. ( -30.93, z-score =  -4.70, R)
>consensus
UUUAAAGUUUGAUGCAUGAGCUUACAAUUAUGUAGGUCAAAAACCGAUCUAAGUCAAUAUUUCUUUUAAUUGUGGGCUUUUCGCAACGAACUUUAUUUAUUGUAUUUUCAACC
..(((((((((.(((..(((((((((((((..((((((.......))))))...............)))))))))))))...))).))))))))).................. (-19.44 = -22.33 +   2.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:55 2011