| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,823,553 – 27,823,658 |
| Length | 105 |
| Max. P | 0.763770 |
| Location | 27,823,553 – 27,823,658 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 88.76 |
| Shannon entropy | 0.19635 |
| G+C content | 0.43603 |
| Mean single sequence MFE | -19.23 |
| Consensus MFE | -15.21 |
| Energy contribution | -15.21 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27823553 105 + 27905053 UAAAUACAAAGGUCAGCACCUGACCAUGCUUAUCACGAUGCUGUUCCUGUUUAUUCACCAACCGCCCCUUCUAUUUACCAAGCUAAGUGAAAGCGCUUUGAUAAG ......((((((((((...))))))..((((.((((...(((......................................)))...))))))))..))))..... ( -20.26, z-score = -1.69, R) >droSim1.chr3R 27440448 105 + 27517382 CAAAUACAAAGGUCAGCACCUGACCAUACUUAUCACGAUGCUGUUCCUGUUUAUCCACCAACCGACCCUUCUAUUUACCAAGCAAAGUGAAAGCGCUUUGAUAAG ..........((((((...))))))...(((((((.(.(((((((..((......))..)))...........(((((........))))))))).).))))))) ( -18.60, z-score = -1.65, R) >droSec1.super_31 479086 105 + 568655 CAAAUACAGAGGUCAGCACCUGACCAUACUUAUCACGAUGCUGUUCCUGUUUAUCCACCAACCGACCCUUCUAUUUACCAAGCAAAGUGAAAGCGCUUUGAUAAG ..........((((((...))))))...(((((((.(.(((((((..((......))..)))...........(((((........))))))))).).))))))) ( -18.60, z-score = -1.29, R) >droYak2.chr3R 28756238 105 + 28832112 UAAAUACAAAGGUCAGCACCUGACCAUGCUUAUCACGAUGCUGUUCUCGUUUAUCCACCACCGACCCCUUCCAUUUACCAAACAAAGUGAAAGCGCUUUGAUAAG ..........((((((...))))))...((((((((((........)))).................................((((((....)))))))))))) ( -19.00, z-score = -2.00, R) >droEre2.scaffold_4820 10342756 94 - 10470090 UAAAUACAAAGGUCAGCACCUGACCAUGCUUAUCACGAUGCUGUUCUCGUUUAUCCACCAACGACCCCUUCCA-----------AAGUAAAAGCGCUCUGAUAAG ..........((((((...))))))...(((((((.((((((....(((((........)))))...((....-----------.))....)))).))))))))) ( -19.70, z-score = -2.81, R) >consensus UAAAUACAAAGGUCAGCACCUGACCAUGCUUAUCACGAUGCUGUUCCUGUUUAUCCACCAACCGCCCCUUCUAUUUACCAAGCAAAGUGAAAGCGCUUUGAUAAG ..........((((((...))))))...(((((((.(.((((.................................................)))).).))))))) (-15.21 = -15.21 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:54 2011