| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,813,233 – 27,813,310 |
| Length | 77 |
| Max. P | 0.904752 |
| Location | 27,813,233 – 27,813,310 |
|---|---|
| Length | 77 |
| Sequences | 6 |
| Columns | 83 |
| Reading direction | reverse |
| Mean pairwise identity | 72.82 |
| Shannon entropy | 0.49493 |
| G+C content | 0.43108 |
| Mean single sequence MFE | -18.14 |
| Consensus MFE | -12.77 |
| Energy contribution | -12.89 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.904752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27813233 77 - 27905053 ------GCAAUGUCUUGUUUAUGCGCUAGAUAAGCAGAAAGUGAUAUUAUGCCUUUGAUUUGGUGCGUGACGGGUACGAAGAA ------....(((((((((.(((((((((((..(((.............))).....))))))))))))))))).)))..... ( -20.22, z-score = -1.49, R) >droPer1.super_0 6579676 78 + 11822988 CAGACUCCGAUCUGUGGCUUUUCCUCUGGCAAUGACGAAUGCAGCAUACC-CCUAACACCUGUUGAAUACCCUGUAGAA---- .......((.((....(((........)))...))))..(((((......-..((((....))))......)))))...---- ( -8.44, z-score = 1.82, R) >droSim1.chr3R 27430008 77 - 27517382 ------GCAAUGUCUUGUUUAUGCACUAGAUAAGCUGAAAGUGAUAUUCUGCCUUUGAUUUGGUGCGUGACGGGUACGACGAA ------....(((((((((.(((((((((((..((.(((.......))).)).....))))))))))))))))).)))..... ( -21.50, z-score = -1.99, R) >droSec1.super_31 468603 77 - 568655 ------GCAAUGUCUUGUUUAUGCACUAGAUAAGCUGAAAGUGAUAUUCUGGCUUUGAUUUGGUGCGUGACGGGUACGACGAA ------....(((((((((.((((((((((((((((..((......))..)))))..))))))))))))))))).)))..... ( -24.60, z-score = -3.16, R) >droEre2.scaffold_4820 10330988 73 + 10470090 ------GCAAUGUCUUGUUUAUGCGCCAGAUAAGCAAAAAGUGAUAUUCCCCCUUUGAUUUUGUGCGUAACGGGUACAA---- ------....(((((((((.((((((.((((......((((.(........))))).)))).)))))))))))).))).---- ( -15.50, z-score = -0.75, R) >droYak2.chr3R 28744343 77 - 28832112 ------GCAAUGUCUUGUUUAUGCGCCAGAUAAGCAGAAAAUGAUAUUCCCCCUUUGAUUUGGUGCCUAACGGGUACAAACAA ------....(((((((((...((((((((((((..(((.......)))...)))..)))))))))..)))))).)))..... ( -18.60, z-score = -1.48, R) >consensus ______GCAAUGUCUUGUUUAUGCGCUAGAUAAGCAGAAAGUGAUAUUCCGCCUUUGAUUUGGUGCGUAACGGGUACAA_GAA ..........(((((((((.(((((((((((..........................))))))))))))))))).)))..... (-12.77 = -12.89 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:54 2011