| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,785,513 – 27,785,618 |
| Length | 105 |
| Max. P | 0.852280 |
| Location | 27,785,513 – 27,785,618 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 89.59 |
| Shannon entropy | 0.17686 |
| G+C content | 0.36954 |
| Mean single sequence MFE | -20.66 |
| Consensus MFE | -13.48 |
| Energy contribution | -14.32 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27785513 105 + 27905053 AAUAAAAACUUUUUGAAAGAAAAAGGCAGCGAAAUGAAAAGCGCUGCGAACUACUCAGUACGAAUUUGGGAGUA--AAUGGAAUGAGACAACCAUACACAGGAAAAA ........((((((.....))))))((((((...(....).))))))..(((.(((((.......)))))))).--.((((..........))))............ ( -20.30, z-score = -2.51, R) >droEre2.scaffold_4820 10304083 105 - 10470090 AAUAAAAACUUUUUGAAAGAAAACGGCAGCAAAAUAAAGAGCGCAGCGAACUACUCAGUACGAAACUGGGAAUG--AAUGAAAUGGGACUGGCAUACACAGGAAACA .........(((((....))))).(.((((..........((...))......((((((.....))))))....--..........).))).).......(....). ( -14.10, z-score = -0.31, R) >droYak2.chr3R 28718212 105 + 28832112 AAUAAAAACUUUUUGAAAGAAAAAGGCAGCGAAAUAAAGAGCGCUGCGAACUACUCAGUACGAUAUUGGGAAUG--AGUGGAAUGAGACUGGCAUACACAGGAAACA ........((((((.....))))))((((((..........))))))...(((((((...(.......)...))--))))).......(((.......)))...... ( -23.70, z-score = -3.27, R) >droSec1.super_31 441840 106 + 568655 CAUAAAAACUUUU-GAAAGAAAAAGGCAGCGAAAUAAAAAGCGCUGCGAACUACUCAGUACGAAAUUGGGAGUAUAAAUGGAAUGAAACAUCCAUACACAGGAAAAA ........(((((-......)))))((((((..........))))))..(((.((((((.....)))))))))....(((((........)))))............ ( -22.60, z-score = -3.80, R) >droSim1.chr3R 27403181 104 + 27517382 CAUAAAAACUUUU-GAAAGAAAAAGGCAGCGAAAUAAAAAGCGCUGCGAACUACUCAGUACGAAAUUGGGAGUA--AAUGGAAUGAAACAUCCAUACACAGGAAAAA ........(((((-......)))))((((((..........))))))..(((.((((((.....))))))))).--.(((((........)))))............ ( -22.60, z-score = -3.73, R) >consensus AAUAAAAACUUUUUGAAAGAAAAAGGCAGCGAAAUAAAAAGCGCUGCGAACUACUCAGUACGAAAUUGGGAGUA__AAUGGAAUGAGACAGCCAUACACAGGAAAAA .........((((((..........((((((..........))))))......((((((.....))))))............................))))))... (-13.48 = -14.32 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:53 2011