| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,772,617 – 27,772,714 |
| Length | 97 |
| Max. P | 0.557390 |
| Location | 27,772,617 – 27,772,714 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 79.44 |
| Shannon entropy | 0.38078 |
| G+C content | 0.48866 |
| Mean single sequence MFE | -21.55 |
| Consensus MFE | -13.32 |
| Energy contribution | -13.47 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557390 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 27772617 97 - 27905053 CCCCGAGGGGAAAAACAG-GCACCCAAUAACUUGCAAGGUGAAAUCCCC----UUUUCCCCCUCUUUGUCCUCC-CAUUCUUUUCACUCCCCGCAAUCAACAG-- ....((((((.((((..(-((((((((....)))...))))....))..----)))).))))))..........-............................-- ( -17.70, z-score = -0.58, R) >droSim1.chr3R 27389043 96 - 27517382 CCCCGAGGGGAAAAACAG-GCACUCAAUAACUUGCAAGGUGAAAUCCCC----UUUUUCCCCUCCUUGUCUUCC-CAUUCUUUUCACUCCCCGCAAUCAACG--- ....(((((((((((..(-((((((((....)))...))))....))..----)))))))))))..........-...........................--- ( -20.00, z-score = -1.53, R) >droSec1.super_31 428269 97 - 568655 CCUCGAGGGGAAAAACAG-GCACUCAAUAACUUGCAAGGUGAAAUCCCC---UUUUUUUCCCUCCUUGUCUUCC-CAUUCUUUUCACUCCCCGCAAUCAACG--- ....(((((((((((.((-((((((((....)))...))))......))---))))))))))))..........-...........................--- ( -17.10, z-score = -0.57, R) >droYak2.chr3R 28704672 96 - 28832112 CCCCGAGGGG-AAAACAG-GCACUCAAUAACUUGCAAGGUGAAAUCCCC----UUUUUCCCCUCUUUGCCUAAC-CAUUAUUUUCCCUCCCCCUAAUCAACAU-- ....((((((-((((.((-((((((((....)))...))))......))----)))))))))))..........-............................-- ( -19.50, z-score = -1.48, R) >droEre2.scaffold_4820 10278455 96 + 10470090 CCCCGAGGGGAAAAACAG-GCACUCAAUAACUUGCAAGGUGAAAUCCCC-----UUUUCCCCUCUUUGUCAAAC-CAUUCUUUUGACUCCCCCUAAUCAACAG-- ....((((((((((....-(((..........)))..((.(....).))-----))))))))))...((((((.-......))))))................-- ( -22.40, z-score = -2.08, R) >droAna3.scaffold_13340 23525075 105 + 23697760 ACCCGAGGGGAAAAGGAAUCCACUCAAUAAAUCGCAAGGUGAGACCUUCUCUGCCUUUUCCUUUCUUGUGGGCCUCGGCCCUGCAUCUUCCCCUAAUAAUCAACG ....((((((((((((..............(((....)))(((.....)))..)))))))))))).(((((((....)))).))).................... ( -32.60, z-score = -2.52, R) >consensus CCCCGAGGGGAAAAACAG_GCACUCAAUAACUUGCAAGGUGAAAUCCCC____UUUUUCCCCUCCUUGUCUUCC_CAUUCUUUUCACUCCCCCCAAUCAACA___ ....(((((((((((....(((..........)))..((......))......)))))))))))......................................... (-13.32 = -13.47 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:52 2011