| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,757,875 – 27,757,983 |
| Length | 108 |
| Max. P | 0.717098 |
| Location | 27,757,875 – 27,757,983 |
|---|---|
| Length | 108 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 76.57 |
| Shannon entropy | 0.46795 |
| G+C content | 0.63603 |
| Mean single sequence MFE | -45.24 |
| Consensus MFE | -26.34 |
| Energy contribution | -27.41 |
| Covariance contribution | 1.07 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717098 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27757875 108 + 27905053 AUGAUGGUCAAUGGAGUGCUCGGCGCCGUGAAGAACUGUGUCGGCACAGAU---ACAGGAACCGGACCCGCAAUCGGUCCGGAGAUCG-CGCCCGGAAUCUGGGCGGCUACC .....((((......((((.((((((.((.....)).))))))))))....---.......(((((((.......))))))).)))).-(((((((...)))))))...... ( -46.50, z-score = -1.88, R) >droAna3.scaffold_13340 23509681 108 - 23697760 AUGAUCGUCAGCGGGGUGCUCGGGGCGGCGAAGAACUGCGCCGGCACGGCUGGCACGGAGACGGAGACGGGCACCUGUACGGGCACGGGCACCUGCGA---GGGCUG-UGCC .....(((..(((((((((.(((.((((.......)))).)))))))(.(((...((....))....))).).))))))))(((((((.(.((.....---))))))-)))) ( -49.40, z-score = -0.95, R) >droEre2.scaffold_4820 10261691 108 - 10470090 AUGAUGGUCAAUGGAGUGCUCGGCGCCGUGAAGAACUGUGUCGGCACAGAU---ACAGGAACCGGACCCGCAAUCGGUCCGGAGAUCG-CGCCCGGAAUCUGGGCGGCUACC .....((((......((((.((((((.((.....)).))))))))))....---.......(((((((.......))))))).)))).-(((((((...)))))))...... ( -46.50, z-score = -1.88, R) >droYak2.chr3R 28688017 108 + 28832112 AUGAUGGUCAAUGGAGUGCUCGGCGCCGUGAAGAACUGUGUCGGCACAGAU---ACAGGAACCGGACCUGCAAUCGGUCCGGAGAUCG-CGCCCGGAAUCUGGGCGGCUACC .....((((......((((.((((((.((.....)).))))))))))....---.......(((((((.......))))))).)))).-(((((((...)))))))...... ( -47.00, z-score = -2.31, R) >droSec1.super_31 412929 108 + 568655 AUGAUGGUCAAUGGAGUGCUCGGCGCCGUGAAGAACUGUGUCGGCACAGAU---ACAGGAACCGGACCCGCAAUCGGUCCGGAGAUCG-CACCCGGAAUCUGGGCGGCUACC .....((((......((((.((((((.((.....)).))))))))))....---.......(((((((.......))))))).))))(-(.(((((...)))))..)).... ( -42.50, z-score = -1.07, R) >droSim1.chr3R 27373234 108 + 27517382 AUGAUGGUCAAUGGAGUGCUCGGCGCCGUGAAGAACUGUGUCGGCACAGAU---ACAGGAACCGGACCCGCAAUCGGUCCGGAGAUCG-CACCCGGAAUCUGGGCGGCUACC .....((((......((((.((((((.((.....)).))))))))))....---.......(((((((.......))))))).))))(-(.(((((...)))))..)).... ( -42.50, z-score = -1.07, R) >droWil1.scaffold_181089 10321284 93 + 12369635 AUGAUUGUCAGCGGUGUACUGGGAGCAGCAAAGAAUUGCGGUGGC---GGU------GGGCCAGCAGCCACUGCUGGCACG----CCAGCGCCUCCGGCCUGGGCA------ .....((((...((....((((..((.((((....))))(.((((---(..------..((((((((...)))))))).))----))).)))..))))))..))))------ ( -42.30, z-score = -0.22, R) >consensus AUGAUGGUCAAUGGAGUGCUCGGCGCCGUGAAGAACUGUGUCGGCACAGAU___ACAGGAACCGGACCCGCAAUCGGUCCGGAGAUCG_CGCCCGGAAUCUGGGCGGCUACC .((.(((((......((((.((((((.((.....)).))))))))))..............(((((.(((....)))))))).))))).))(((((...)))))........ (-26.34 = -27.41 + 1.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:51 2011