| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,750,723 – 27,750,813 |
| Length | 90 |
| Max. P | 0.801042 |
| Location | 27,750,723 – 27,750,813 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 81.44 |
| Shannon entropy | 0.36239 |
| G+C content | 0.45483 |
| Mean single sequence MFE | -25.80 |
| Consensus MFE | -20.18 |
| Energy contribution | -20.12 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801042 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27750723 90 - 27905053 ---------------------GCCUCUGUCC--CUGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUGGGG-- ---------------------........((--(..(....(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))...)..)))-- ( -27.30, z-score = -2.52, R) >droGri2.scaffold_14830 1229829 91 + 6267026 --------------------GACCGUUGCCGU-UGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUAGU--- --------------------((((((((((((-(((...((((((...))))..))...)))))))).......)))))))...((((((....))))))............--- ( -24.21, z-score = -1.08, R) >droMoj3.scaffold_6540 18400137 91 - 34148556 ------------------GGCAGAGC---CCGUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUAGU--- ------------------.((.((((---(....)))))..(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))...))...--- ( -25.90, z-score = -1.09, R) >droVir3.scaffold_13047 14953264 94 - 19223366 ------------------GACAGGGCCAGCCGUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUAGU--- ------------------.((.(((((((...)))))))..(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))...))...--- ( -26.10, z-score = -0.56, R) >droWil1.scaffold_181089 10310958 112 - 12369635 GCUUCUGCCGUUGCUGUUGCCAUUGCUGCCUUCUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUAGU--- ((....(((((((.(((.(((((((..(((....)))....((((...))))........))))))).)))..)))))))....((((((....))))))))..........--- ( -28.80, z-score = -0.42, R) >droPer1.super_0 6475633 109 + 11822988 ---UUUUCUGGUCUCCUUGUGCUGUGCGCCUUUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCCACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUACCAAAUCGUGGC--- ---......((((.....((((...)))).....)))).(((((....((.....))...)))))((((((.....((((...(((((......)))))))))...))))))--- ( -25.80, z-score = -0.15, R) >dp4.chr2 15061167 104 - 30794189 ------UCUG--CUCCUUGUGCUGUGCGCCUUUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCCACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUUGC--- ------....--........((...(((((....)))....(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))...)).))--- ( -28.40, z-score = -1.18, R) >droAna3.scaffold_13340 23502379 92 + 23697760 ---------------------UCUGCUGUCC--UCGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUUGGGAU ---------------------......((((--(.((....(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))...)).))))) ( -25.90, z-score = -2.18, R) >droEre2.scaffold_4820 10254454 90 + 10470090 ---------------------GCCUCUGUCU--CUGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUGGGG-- ---------------------........((--(..(....(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))...)..)))-- ( -24.30, z-score = -1.72, R) >droYak2.chr3R 28680819 90 - 28832112 ---------------------GCCUCUGUCU--CUGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUGGGG-- ---------------------........((--(..(....(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))...)..)))-- ( -24.30, z-score = -1.72, R) >droSec1.super_31 405752 90 - 568655 ---------------------GCCUCUGUCU--CUGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUGGGG-- ---------------------........((--(..(....(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))...)..)))-- ( -24.30, z-score = -1.72, R) >droSim1.chr3R 27366020 90 - 27517382 ---------------------GCCUCUGUCU--CUGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAACCGUGGGG-- ---------------------........((--(..(....(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))...)..)))-- ( -24.30, z-score = -1.45, R) >consensus _____________________GCCUCUGUCU__UGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUGGG___ .........................................(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))........... (-20.18 = -20.12 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:50 2011