| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,723,808 – 27,723,923 |
| Length | 115 |
| Max. P | 0.783187 |
| Location | 27,723,808 – 27,723,923 |
|---|---|
| Length | 115 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.72 |
| Shannon entropy | 0.31139 |
| G+C content | 0.33044 |
| Mean single sequence MFE | -26.27 |
| Consensus MFE | -23.30 |
| Energy contribution | -22.83 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783187 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 27723808 115 - 27905053 GGCCCGGCAAAUAAUGUGCU-AAAUAAAUUGCGAAAAAUUACAUAAAAUAUUUAAGCGCAUUCAAGUGUGGCGCUAUAAAAAAUGGCGGGGCAUUAAACAUGUUUUUUUCCGCGAU---- .((((.(((...((((((((-(((((...((..(....)..)).....))))).))))))))....)))..((((((.....))))))))))........................---- ( -26.30, z-score = -0.31, R) >droSim1.chr3R 27338328 115 - 27517382 GGCCCGGCAAAUAAUGUGCU-AAAUAAAUUGCGAAAAAUUACAUAAAAUAUUUAAGCGCAUUCAAGUGUGGCGCUAUAAAAAAUGGCGGGGCAUUAAACAUGUUUUUUUCCGCGAU---- .((((.(((...((((((((-(((((...((..(....)..)).....))))).))))))))....)))..((((((.....))))))))))........................---- ( -26.30, z-score = -0.31, R) >droSec1.super_31 378177 115 - 568655 GGCCCGGCAAAUAAUGUGCU-AAAUAAAUUGCGAAAAAUUACAUAAAAUAUUUAAGCGCAUUCAAGUGUGGCGCUAUAAAAAAUGGCGGGGCAUUAAACAUGUUUUUUUCCGCGAU---- .((((.(((...((((((((-(((((...((..(....)..)).....))))).))))))))....)))..((((((.....))))))))))........................---- ( -26.30, z-score = -0.31, R) >droEre2.scaffold_4820 10222491 114 + 10470090 GGCCCGGCAAAUAAUGUGCU-AAAUAAAUUGCGAAAAAUUACAUAAAAUAUUUAAGCGCAUUCAAGUGUGGCGCUAUAAAAAAUGGCGGGGCAUUAAAAAUG-UUUUUCCCGUGAU---- .((((.(((...((((((((-(((((...((..(....)..)).....))))).))))))))....)))..((((((.....))))))))))..........-.............---- ( -26.30, z-score = -0.51, R) >droYak2.chr3R 28652871 115 - 28832112 GGCCCGGCAAAUAAUGUGCU-AAAUAAAUUGCGAAAAAUUACAUAAAAUAUUUAAGCGCAUUCAAGUGUGGCGCUAUAAAAAAUGGCGGGGCAUUAAAAAUGUUUUUUUCCGUGAU---- .((((.(((...((((((((-(((((...((..(....)..)).....))))).))))))))....)))..((((((.....))))))))))........................---- ( -26.30, z-score = -0.56, R) >droAna3.scaffold_13340 23472362 110 + 23697760 GGCCCGGCGAAUAAUGCGCUAAAAUAAAUUGCGAAAAAUUACAUAAAAUAUUUAAGCGCAUUCAAGUGUGGCGCCAU-AAAAAUGGCGGGGCAUUAAA-AUGUUUUCCUUUC-------- .((((.(((...((((((((.(((((...((..(....)..)).....))))).))))))))....)))..((((((-....))))))))))......-.............-------- ( -30.60, z-score = -1.93, R) >dp4.chr2 15030362 113 - 30794189 ------GCAAAUAAUGCGCU-AAAUAAAUUGCGAAAAAUUACAUAAAAUAUUUAAGCGCAUUCAAGUGUAGCGCUAUAAAAAAUGGCGGGGCAUUAAAAGAUUUUUUUUGUUUUGUUUUU ------(((((.((((((((-(((((...((..(....)..)).....))))).))))))))..(((((..((((((.....))))))..)))))...........)))))......... ( -23.60, z-score = 0.00, R) >droPer1.super_0 6445542 112 + 11822988 ------GCAAAUAAUGCGCU-AAAUAAAUUGCGAAAAAUUACAUAAAAUAUUUAAGCGCAUUCAAGUGUAGCGCUAUAAAAAAUGGCGGGGCAUUAAGAGA-UUUUUUUGUUUUGUUUUU ------(((((.((((((((-(((((...((..(....)..)).....))))).))))))))..(((((..((((((.....))))))..)))))......-....)))))......... ( -23.60, z-score = 0.01, R) >droWil1.scaffold_181089 10278127 103 - 12369635 GGCCCAAAAAAUAAUGCGCU-AAAUAAAUUGCGAAAAAUUACAUAAAAUAUUUAAGCGCAUUCAAGUGUGGCGCUAUAAAAAAUGGCGAGGCAUUAAAAAUUUU---------------- .(((((......((((((((-(((((...((..(....)..)).....))))).))))))))......)).((((((.....)))))).)))............---------------- ( -22.50, z-score = -1.37, R) >droVir3.scaffold_13047 14920863 98 - 19223366 -----AAAAAAUAAUGCGCU-AAAUAAAUUGCGAAAAAUUACAUAAAAUAUUUAAGCGCAUUCAAGUGUGGCGCCAUAAAAAAUGGCGUGGCAUUAAAAAUUUU---------------- -----.......((((((((-(((((...((..(....)..)).....))))).))))))))..(((((.(((((((.....))))))).))))).........---------------- ( -27.80, z-score = -2.71, R) >droMoj3.scaffold_6540 18363653 103 - 34148556 UGCCUGGAAAAUAAUGCGCU-AAAUAAAUUGCGAAAAAUUACAUAAAAUAUUUAAGCGCAUUCAAGUGUGGCGCCAUAAAAAAUGGCGUGGCAUUAAAAAUUUU---------------- ............((((((((-(((((...((..(....)..)).....))))).))))))))..(((((.(((((((.....))))))).))))).........---------------- ( -27.80, z-score = -2.64, R) >droGri2.scaffold_14830 1196792 98 + 6267026 -----AAAAUAUAAUGCGCU-AAAUAAAUUGCGAAAAAUUACAUAAAAUAUUUAAGCGCAUUCAAGUGUGGCGCCAUAAAAAAUGGCGUGGCAUUAAAAAUUUU---------------- -----.......((((((((-(((((...((..(....)..)).....))))).))))))))..(((((.(((((((.....))))))).))))).........---------------- ( -27.80, z-score = -2.60, R) >consensus GGCCCGGCAAAUAAUGCGCU_AAAUAAAUUGCGAAAAAUUACAUAAAAUAUUUAAGCGCAUUCAAGUGUGGCGCUAUAAAAAAUGGCGGGGCAUUAAAAAUGUUUUUUUCCG___U____ ............((((((((.(((((...((..(....)..)).....))))).))))))))..(((((..((((((.....))))))..)))))......................... (-23.30 = -22.83 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:48 2011