| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,392,128 – 9,392,210 |
| Length | 82 |
| Max. P | 0.705856 |
| Location | 9,392,128 – 9,392,210 |
|---|---|
| Length | 82 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 72.02 |
| Shannon entropy | 0.52703 |
| G+C content | 0.43879 |
| Mean single sequence MFE | -19.39 |
| Consensus MFE | -10.43 |
| Energy contribution | -11.37 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9392128 82 + 23011544 ----------UCG--GGUCGUUUUUCAUCCAACAUCAUGGCAUACAAAAAAAAAUUGGAAAAAGUUUUCCAUUAGAUUGGACAGCAGCUGAGCG ----------(((--(....((((((..(((......)))....(((.......)))))))))(((.((((......)))).)))..))))... ( -13.50, z-score = 0.06, R) >droMoj3.scaffold_6500 16277242 66 + 32352404 ---------------------------UCGAGCAUCCUUUCAUCCUCUCUGUGCUCUAAAGUUGUUGCAU-UUAUAUUGGAUGGCAGCUGAGCG ---------------------------....((.((((.((((((.....((((............))))-.......)))))).))..)))). ( -13.20, z-score = 0.33, R) >droAna3.scaffold_12943 745020 92 + 5039921 UCGUCGUCGGUCGACGGUCGUCUUUCAUCCGACAUCAUCGCAAAC--AAGGAGGGGACUGAAAGUUGUCCAUUAGAUUGGACAGCAGCUGAGCG .....(((((..((.((....)).))..))))).....(((....--....((....))....((((((((......))))))))......))) ( -29.50, z-score = -1.11, R) >droEre2.scaffold_4929 10004247 76 + 26641161 ----------UAG--GGUCGUUCUUCAUCCGACAUCAUGGCAAA------AAAAAUUGAAAAAGUUGUCCAUUAGAUUGGACAGCAGCUGAGCG ----------...--.((((.........)))).....(((...------.....((....))((((((((......)))))))).)))..... ( -18.10, z-score = -1.44, R) >droYak2.chr2L 12065943 80 + 22324452 ----------UCG--GGUCGUUUUUCAUCCGACAUCAGGGCAAA--AAAAAAAAAUGGAAAAAGUUGUCCAUUAGAUUGGACAGCAGCUGAGCG ----------(((--(((........))))))..((((......--.........(....)..((((((((......))))))))..))))... ( -20.30, z-score = -1.94, R) >droSec1.super_3 4848947 79 + 7220098 ----------UCG--GGUCGUUUUUCAUCCGACAUCAUGGCAAA--ACAAAAAA-UGUAAAAAGUUGUCCAUUAGAUUGGACAGCAGCUGAGCG ----------(((--(((........))))))......(((...--(((.....-))).....((((((((......)))))))).)))..... ( -21.00, z-score = -2.44, R) >droSim1.chr2L 9171165 79 + 22036055 ----------UCG--GGUCGUUUUUCAUCCGACAUCAUGGCAAA--ACAAAAAA-UGGAAAAAGUUGUCCAUUAGAUUGGACAGCAGCUGAGCG ----------(((--(((........))))))......(((...--.((.....-))......((((((((......)))))))).)))..... ( -20.10, z-score = -1.73, R) >consensus __________UCG__GGUCGUUUUUCAUCCGACAUCAUGGCAAA__AAAAAAAA_UGGAAAAAGUUGUCCAUUAGAUUGGACAGCAGCUGAGCG ................((((.........))))..............................((((((((......))))))))......... (-10.43 = -11.37 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:07 2011