| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,693,828 – 27,693,923 |
| Length | 95 |
| Max. P | 0.683339 |
| Location | 27,693,828 – 27,693,923 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.57 |
| Shannon entropy | 0.57492 |
| G+C content | 0.37530 |
| Mean single sequence MFE | -16.90 |
| Consensus MFE | -8.15 |
| Energy contribution | -8.22 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.683339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27693828 95 + 27905053 ----------UCCCCUCCUGC-AUAAGGCCACAUUCGAUAAGCC-AAAAUGCUUUGAUAAGCGAAA-------------UGUGUCGACUACUUGCUGAUAAGCACAUUUAUCGAUCGAUU ----------......(((..-...)))......((((((((..-....(((((.....(((((..-------------.((....))...)))))...)))))..))))))))...... ( -16.50, z-score = -0.20, R) >droSim1.chr3R 27317391 95 + 27517382 ----------UCCCCUCCUGC-AUAACCCCACAUUCGAUAAGCC-AAAAUGCUUUGAUAAGCGAAA-------------UGUGUCGACUACUUGCUGAUAAGCACAUUUAUCGAUCGAUU ----------...........-............((((((((..-....(((((.....(((((..-------------.((....))...)))))...)))))..))))))))...... ( -14.80, z-score = -1.00, R) >droSec1.super_31 357263 95 + 568655 ----------UCCCCUCCUGC-AUAACGCCACAUUCGAUAAGCC-AAAAUGCUUUGAUAAGCGAAA-------------UGUGUCGACUACUUGCUGAUAAGCACAUUUAUCGAUCGAUU ----------.........((-((..(((.....((((..(((.-.....)))))))...)))..)-------------)))(((((.....((((....))))......)))))..... ( -16.00, z-score = -0.64, R) >droYak2.chr3R 28630960 95 + 28832112 ----------UCCCCUCCUGC-AUAACGCCACAUUCGAUAAGCC-AAAAUGCUUUGAUAAGCGAAA-------------UGUGUCGACUACUUGCUGAUAAGCACAUUUAUCGAUCGAUU ----------.........((-((..(((.....((((..(((.-.....)))))))...)))..)-------------)))(((((.....((((....))))......)))))..... ( -16.00, z-score = -0.64, R) >droEre2.scaffold_4820 10201047 95 - 10470090 ----------UCCCCUCCUGC-AUAACGCCACAUUCGAUAAGCC-AAAACGCUUUGAUAAGCGAAA-------------UGUGUCGACUACUUGCUGAUAAGCACAUUUAUCGAUCGAUU ----------.........((-.....)).....((((((((..-....(((((....)))))...-------------.............((((....))))..))))))))...... ( -16.40, z-score = -0.84, R) >droAna3.scaffold_13340 23450586 82 - 23697760 --------------UCCCCGCGAUAA-GCCGCAUUUGAUAA---------GCUUUGAUA-GCCAGA-------------AGUAUCGACAAACUGCUGAUAAGCAAAUUUAUCGAUCGCUG --------------.....(((((.(-((.(...((((((.---------..((((...-..))))-------------..))))))....).)))((((((....)))))).))))).. ( -16.30, z-score = -0.79, R) >dp4.chr2 15006370 103 + 30794189 GACGUCGCCAUCCUUCCGUGCGAUAAUGCGGCAUUUGAUAAACC-AAAAUGCUUUGAUAAGCUAAA-------------AGUAUC---AGGCAACUGAUAAGCACAUUUAUCGAUCGCAU ...((((((........).))))).(((((((((((........-.)))))).((((((((.....-------------..((((---((....))))))......)))))))).))))) ( -29.72, z-score = -2.99, R) >droPer1.super_0 6421238 94 - 11822988 ----------UCUUUCCGUGCGAUAAUGCGGCAUUUGAUAAACCCAAAAUGCUUUGAUAAGCUAAA-------------AGUAUC---AGGCAACUGAUAAGCACAUUUAUCGAUCGCAU ----------.......(((((((.....(((((((..........))))))).(((((((.....-------------..((((---((....))))))......)))))))))))))) ( -26.82, z-score = -3.21, R) >droWil1.scaffold_181089 10253552 103 + 12369635 -----------UUUCCUAAAAGAUAACGUUAUUGAUGAUAAACC------GCUUUGAUAAGCAAAAUUAUCUAUCCCAAAAUAUAUAUUAAAUGCUGAUAAGUGCAAUUAUCGAUCGAUU -----------...................(((((((((((..(------((((.....((((....(((.(((......))).))).....))))...)))))...))))).)))))). ( -14.00, z-score = -0.90, R) >droVir3.scaffold_13047 14894698 81 + 19223366 ----------------------AAUAUGAUAAGUCUGAUAAACU-AAACUGCUUUGAUAAGC-AAA-------------AAUAUCA--AUUCUGCUGAUAAGCUCAAUUAUCGAUCCAUU ----------------------....((((((...(((......-....(((((....))))-)..-------------.......--.....(((....)))))).))))))....... ( -11.40, z-score = -0.85, R) >droMoj3.scaffold_6540 18337048 81 + 34148556 ----------------------AAUAUGAUAAGUCAGAUAAACU-AAACUGCUUUGAUAAGC-AAA-------------AAUAUCA--AAUCUGCUGAUAAGCUCAAUUAUCGAUCCAUU ----------------------.....(((.((.(((((.....-....(((((....))))-)..-------------.......--.)))))))(((((......))))).))).... ( -11.91, z-score = -1.00, R) >droGri2.scaffold_14830 1170070 81 - 6267026 ----------------------CAUAUGAUAAGUCUGAUAAACU-AAACUGCUUUGAUAAGC-AAA-------------AAUAGCA--AAUCUGCUGAUAAGCUCAAUUAUCGAUCCAUU ----------------------....((((((...(((......-....(((((....))))-)..-------------..(((((--....)))))......))).))))))....... ( -13.00, z-score = -1.10, R) >consensus __________UCCCCUCCUGC_AUAACGCCACAUUUGAUAAACC_AAAAUGCUUUGAUAAGCGAAA_____________AGUAUCGACAACCUGCUGAUAAGCACAUUUAUCGAUCGAUU ...................................((((((.........((((....))))...............................(((....)))....))))))....... ( -8.15 = -8.22 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:47 2011