| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,690,305 – 27,690,415 |
| Length | 110 |
| Max. P | 0.579252 |
| Location | 27,690,305 – 27,690,415 |
|---|---|
| Length | 110 |
| Sequences | 15 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 79.13 |
| Shannon entropy | 0.48487 |
| G+C content | 0.41981 |
| Mean single sequence MFE | -15.31 |
| Consensus MFE | -12.29 |
| Energy contribution | -12.33 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.44 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27690305 110 - 27905053 ---AUACAUCUG-AAACGAAACUCUCGCUAACUGACGACAA---ACUCUAUUUUCUC-UUUUUC-UCUGUAGAUGGUCACGCCUGAUGCUCUCUUUACCCUUUUUGGUACGUCUGCACA ---........(-(((.((.....((((.....).)))...---..))...))))..-......-..((((((((((((....))))........((((......)))))))))))).. ( -15.00, z-score = -0.31, R) >droSim1.chr3R 27313743 110 - 27517382 ---AUACAUCUG-AAACGAAACUCUCGCUAACUGACGACAA---ACUCUAUUUUCUC-UUUUUC-UCUGUAGAUGGUCACGCCUGAUGCUCUCUUUACCCUUUUUGGUACGUCUGCACA ---........(-(((.((.....((((.....).)))...---..))...))))..-......-..((((((((((((....))))........((((......)))))))))))).. ( -15.00, z-score = -0.31, R) >droSec1.super_31 353596 110 - 568655 ---AUACAUCUG-AAACGAAACUCUCGCUAACUGACGACAA---ACUCUAUUUUCUC-UUUUUC-UCUGUAGAUGGUCACGCCUGAUGCUCUCUUUACCCUUUUUGGUACGUCUGCACA ---........(-(((.((.....((((.....).)))...---..))...))))..-......-..((((((((((((....))))........((((......)))))))))))).. ( -15.00, z-score = -0.31, R) >droYak2.chr3R 28627156 108 - 28832112 ---AUACAUCUG-AAACGAAACUCUCGCUAACUGACGACAA---ACUCUA--UUCUC-UUUUUC-UCUGUAGAUGGUCACGCCUGAUGCUCUCUUUACCCUUUUUGGUACGUCUGCACA ---........(-((..((.....((((.....).)))...---..))..--)))..-......-..((((((((((((....))))........((((......)))))))))))).. ( -14.80, z-score = -0.24, R) >droEre2.scaffold_4820 10197347 108 + 10470090 ---AUUCAUCUG-AAACGAAACUCUCGCUAACUGACGACAA---ACUCUA--UUCUC-UUUUUC-UCUGUAGAUGGUCACGCCUGAUGCUCUCUUUACCCUUUUUGGUACGUCUGCACA ---..((.((..-...(((.....)))......)).))...---......--.....-......-..((((((((((((....))))........((((......)))))))))))).. ( -14.90, z-score = -0.19, R) >droAna3.scaffold_13340 23447153 108 + 23697760 ---GUACAUCUG-AAAC-AAUCUAUCGCUAACUGACGACA----ACUCUAUUUUCUC-UUUUUC-UCUGUAGAUGGUCACGCCUGAUGCUCUCUUUACCCUCUUUGGUACGUCUGCACA ---.........-....-......((((.....).)))..----.............-......-..((((((((((((....))))........((((......)))))))))))).. ( -14.80, z-score = -0.23, R) >dp4.chr2 15002214 114 - 30794189 ---AUACACCUA-AAACGAAUCUCUCGCUAACUGACGACAAAACUCUCUAUUUUCUCUUUUUUC-UCUGUAGAUGGUCACGCCUGAUGCUCUCUUUACCCUCUUUGGUACGUCUGCACA ---.........-...........((((.....).)))..........................-..((((((((((((....))))........((((......)))))))))))).. ( -14.60, z-score = -0.64, R) >droPer1.super_0 6417018 114 + 11822988 ---AUACACCUA-AAACGAAUCUCUCGCUAACUGACGACAAAACUCUCUAUUUUCUCUUUUUUC-UCUGUAGAUGGUCACGCCUGAUGCUCUCUUUACCCUCUUUGGUACGUCUGCACA ---.........-...........((((.....).)))..........................-..((((((((((((....))))........((((......)))))))))))).. ( -14.60, z-score = -0.64, R) >droWil1.scaffold_181089 10249721 111 - 12369635 ---ACACACCUA-AAACAAAACUUUCGCUAACUGACAAAAAU--CUUCUAUUUUCUC-UUUUUC-UCUGUAGAUGGUCACGCCUGAUGCUCUCUUUACCCUCUUUGGUACGUCUGCACA ---.........-.............................--.............-......-..((((((((((((....))))........((((......)))))))))))).. ( -13.70, z-score = -1.07, R) >droVir3.scaffold_13047 14891354 112 - 19223366 CAUACAU--CUACAAACAAAACUCUCGCUAACUGACAACAAA--CUUCUA-UUUCUC-UUUUUC-UCUGUAGAUGGUCACGCCUGAUGCUCUAUUUACCCUCUUUGGUACGUCUGCACA ....(((--(((((............................--......-......-......-..)))))))).....((..((((..(((...........)))..)))).))... ( -14.11, z-score = -1.03, R) >droMoj3.scaffold_6540 18333509 114 - 34148556 -AAACAUCUCUACAACCAAAACUUUCGCUAACUGACAACAAA--CUUCUAUUUUCUC-UUUUUC-UCUGUAGAUGGUCACGCCUGAUGCUCUAUUUACCCUCUUUGGUACGUCUGCACA -.........................................--.............-......-..((((((((((((....))))........((((......)))))))))))).. ( -13.70, z-score = -0.92, R) >droGri2.scaffold_14830 1166638 112 + 6267026 -AAACAU--CUACAAGCAAAACUUUCGCUAACUGACGACAAA--CUUCUAUUUUCUC-UUUUUC-UCUGUAGAUGGUCACGCCUGAUGCUCUAUUUACCCUCUUUGGUACGUCUGCACA -...(((--((((((((.........))).......((....--..)).........-......-..)))))))).....((..((((..(((...........)))..)))).))... ( -17.40, z-score = -1.25, R) >anoGam1.chr2R 48522161 111 - 62725911 --------CAUUUGAAAGAAAUAUUUCUCAUCUGCUAACUGAAUUUUUCUCUAUUUUUCUUCUCUUCUGUAGAUGGUCACGCCUGAUGCUCUAUUUACCCUCUUUGGUAUGUCCGCACA --------.....((((......)))).(((((((.....(((................)))......)))))))((((....))))((......((((......)))).....))... ( -13.89, z-score = 0.08, R) >apiMel3.Group8 9400319 109 - 11452794 ---------AUACAUUUGAAUCCUAUUAUACUCGCUGACUACUGACUGGACUCUGUCUGUUCUC-UGUGUAGAUGGUCACGCCUGACGCUCUCUUUACCCUGUUUGGUACGUCUCCACA ---------...........................((..((.(((........))).))..))-.(((.(((((((((....))))........((((......))))))))).))). ( -19.60, z-score = 0.03, R) >triCas2.ChLG9 13125895 118 - 15222296 -CUGCCCUUCCGGUGGCAACGCCUACCUCUUUGUGCCACGUUACAUCCUCCUGUCAUCUUUCUCUCUCGUAGACGGUCACGCCUGAUGCUCUCUUUACACUAUUUGGUAUGUUUUCACA -..........((((....))))((((.....(((........((((.....(((................)))((.....)).)))).........))).....)))).......... ( -18.62, z-score = 0.36, R) >consensus ___AUACAUCUA_AAACGAAACUCUCGCUAACUGACGACAA___ACUCUAUUUUCUC_UUUUUC_UCUGUAGAUGGUCACGCCUGAUGCUCUCUUUACCCUCUUUGGUACGUCUGCACA ...................................................................((((((((((((....))))........((((......)))))))))))).. (-12.29 = -12.33 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:46 2011