| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,687,807 – 27,687,884 |
| Length | 77 |
| Max. P | 0.984048 |
| Location | 27,687,807 – 27,687,884 |
|---|---|
| Length | 77 |
| Sequences | 12 |
| Columns | 89 |
| Reading direction | forward |
| Mean pairwise identity | 91.35 |
| Shannon entropy | 0.18124 |
| G+C content | 0.30281 |
| Mean single sequence MFE | -20.07 |
| Consensus MFE | -18.19 |
| Energy contribution | -17.78 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.984048 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 27687807 77 + 27905053 AUGUGGUUGCGUUUGUUUGGCAGAAGUUUAUAUUUGGGCAUUUAAACUCAAAUUAAAUGCAUUUGCAUACAAAUAAA------------ ..........((((((...(((((.(((((.(((((((........))))))))))))...)))))..))))))...------------ ( -16.90, z-score = -1.04, R) >droAna3.scaffold_13340 23444789 89 - 23697760 AUGCGGUUGCGUUUGUUUGCCAAAAGUUUAUAUUUGAGUAUUUAAACUUAAAUUAAAUGCAUUUGCAUUUGCAUUUUCAUGCAGACAAA .(((((.((((((((.((.....(((((((.((......)).))))))).)).)))))))).)))))(((((((....))))))).... ( -20.80, z-score = -0.87, R) >droEre2.scaffold_4820 10194844 77 - 10470090 AUGUGGUUGCGUUUGUUUGGCAGAAGUUUAUAUUUGGGUAUUUAAACUCAAAUUAAAUGCAUUUGCAUGCAAACAAA------------ ..........((((((...(((((.(((((.((((((((......)))))))))))))...)))))..))))))...------------ ( -21.30, z-score = -2.70, R) >droYak2.chr3R 28624476 77 + 28832112 GUGUGGUUGCGUUUGUUUGGCAGAAGUUUAUAUUUGGGUAUUUAAACUCAAAUUAAAUGCAUUUGCAUGCAAACAAA------------ ..........((((((...(((((.(((((.((((((((......)))))))))))))...)))))..))))))...------------ ( -21.30, z-score = -2.58, R) >droSim1.chr3R 27311215 77 + 27517382 AUGUGGUUGCGUUUGUUUGGCAGAAGUUUAUAUUUGGGUAUUUAAACUCAAAUUAAAUGCAUUUGCAUACAAACAAA------------ ..........((((((...(((((.(((((.((((((((......)))))))))))))...)))))..))))))...------------ ( -21.00, z-score = -2.98, R) >droPer1.super_0 6414465 77 - 11822988 GUGUGGUUGCGUUUGUUUGGCAAAAGUUUAUAUUUGGGUAUUUAAACUCAAAUUAAAUGCAUUUGCAUGCAAACAAA------------ ..........((((((...(((((.(((((.((((((((......)))))))))))))...)))))..))))))...------------ ( -21.20, z-score = -2.66, R) >dp4.chr2 14999725 77 + 30794189 GUGUGGUUGCGUUUGUUUGGCAAAAGUUUAUAUUUGGGUAUUUAAACUCAAAUUAAAUGCAUUUGCAUGCAAACAAA------------ ..........((((((...(((((.(((((.((((((((......)))))))))))))...)))))..))))))...------------ ( -21.20, z-score = -2.66, R) >droSec1.super_31 351044 77 + 568655 AUGUGGUUGCGUUUGUUUGGCAGAAGUUUAUAUUUGGGUAUUUAAACUCAAAUUAAAUGCAUUUGCAUACAAACAAA------------ ..........((((((...(((((.(((((.((((((((......)))))))))))))...)))))..))))))...------------ ( -21.00, z-score = -2.98, R) >droWil1.scaffold_181089 10247014 77 + 12369635 AUGUGGUUACGUUUGUUUGGCAAAAGUUUAUAUUUGGGUAUUUAAACUCAAAUUAAAUACAUUUGCAUGUAAACAAA------------ ...........(((((((((((((.((....((((((((......)))))))).....)).)))))...))))))))------------ ( -16.30, z-score = -2.02, R) >droGri2.scaffold_14830 1163848 76 - 6267026 CUGUGGUUGCGUUUGUUUGGCAAAAGUUUAUAUUUGGGUAUUUAAACUCAAAUUAAAUGCAUUU-CAUGCAAACAAA------------ ..........((((((.(((.....(((((.((((((((......))))))))))))).....)-)).))))))...------------ ( -17.20, z-score = -1.95, R) >droMoj3.scaffold_6540 18330700 77 + 34148556 CUGUGGUUGCGUGUGUUUGUCAAAAGUUUAUAUUUGGGUAUUUAAACUCAAAUUAAAUGCAUUUGCAUGCAAACAAA------------ ...((.(((((((((..(((.....(((((.((((((((......))))))))))))))))..))))))))).))..------------ ( -21.50, z-score = -3.18, R) >droVir3.scaffold_13047 14888310 77 + 19223366 CUGUGGUUGCGUUUGUUUGGCAAAAGUUUAUAUUUGGGUAUUUAAACUCAAAUUAAAUGCAUUUGCAUGCAAACAAA------------ ..........((((((...(((((.(((((.((((((((......)))))))))))))...)))))..))))))...------------ ( -21.20, z-score = -2.79, R) >consensus AUGUGGUUGCGUUUGUUUGGCAAAAGUUUAUAUUUGGGUAUUUAAACUCAAAUUAAAUGCAUUUGCAUGCAAACAAA____________ ..........((((((...(((((.((....((((((((......)))))))).....)).)))))..))))))............... (-18.19 = -17.78 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:45 2011