| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,644,773 – 27,644,834 |
| Length | 61 |
| Max. P | 0.652662 |
| Location | 27,644,773 – 27,644,834 |
|---|---|
| Length | 61 |
| Sequences | 7 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 57.06 |
| Shannon entropy | 0.75430 |
| G+C content | 0.42146 |
| Mean single sequence MFE | -11.53 |
| Consensus MFE | -3.71 |
| Energy contribution | -2.71 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 2.00 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27644773 61 - 27905053 ----------UAGAAGCCGAC----CAGUGAUGGCAACCUUGCUAGGAUAUCGACGAUGAAAAAGAACCUUAAAU ----------.....(.((((----(((..(.(....).)..)).))...))).).................... ( -8.40, z-score = -0.76, R) >dp4.chr2 14639447 54 + 30794189 ----------GGAAAGGUGAUGAAAGAGUGAUGGAAACCUUUCCAAGAUUAAGGCAACACAAAA----------- ----------((((((((..................))))))))........(....)......----------- ( -12.27, z-score = -2.31, R) >droPer1.super_0 4250215 54 - 11822988 ----------GGAAAGGUGAUGAAAGAGUGAUGGAAACCUUUCCAAGAUUAAGGCAACACAAAA----------- ----------((((((((..................))))))))........(....)......----------- ( -12.27, z-score = -2.31, R) >droSim1.chr3R 27267599 60 - 27517382 ----------UAGAAGUCGAC----CAGUGAUGGCAACC-UGCUAGGAUUUCGACGAUGAAAAAGAACCUCAAAC ----------.....(((((.----.(((..((((....-.))))..)))))))).................... ( -11.30, z-score = -1.05, R) >droSec1.super_31 299653 61 - 568655 ----------UAGAAGUCGAC----CAGUGAUGGCAACCUUGCUAGGAUAUCGACGAUGAAAAAGAACCUCAAAU ----------.....((((((----(((..(.(....).)..)).))...))))).................... ( -13.40, z-score = -2.19, R) >droEre2.scaffold_4820 10144596 60 + 10470090 ----------UAGAAGGCGAC----CAGUGAUGGCAGCCUUGCUACGAUCUCGACGAUGAAUAAGAACCCUUAA- ----------((((((((..(----((....)))..))))).)))((....))........((((....)))).- ( -15.80, z-score = -2.47, R) >droAna3.scaffold_13340 23393899 75 + 23697760 AAGAAGCACCGACUAUAAGCCCUCACAGUAAUCUUUAAAUGGGCAGGAUCUGAAUACUGGAAUAAUACCUUAAGU ........((........((((..................))))((..........))))............... ( -7.27, z-score = 1.86, R) >consensus __________UAGAAGGCGAC____CAGUGAUGGCAACCUUGCUAGGAUUUCGACGAUGAAAAAGAACCUUAAA_ ...............................(((((....))))).............................. ( -3.71 = -2.71 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:43 2011