| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,620,377 – 27,620,472 |
| Length | 95 |
| Max. P | 0.731116 |
| Location | 27,620,377 – 27,620,472 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 68.06 |
| Shannon entropy | 0.59858 |
| G+C content | 0.59050 |
| Mean single sequence MFE | -37.59 |
| Consensus MFE | -15.36 |
| Energy contribution | -17.40 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27620377 95 + 27905053 -----UAAGUGUGCGAGUCUCGUGGGCCAAAGGCGAAAAAAACGCUGUUCGGUG------GCGGGAAG--AAAUUACAGCUGCCGCCG--CACAGCUGCUCGCCGCGGAG -----...(((.((((((.......(((...))).........(((((.(((((------((((.((.--...))....)))))))))--.))))).))))))))).... ( -41.50, z-score = -2.27, R) >droSim1.chr3R 27238246 91 + 27517382 -----GUAGUGUGCGAGUCUCGUGGGCCAAAGGCGAAAAAA-CGCUGUUCGGUG------GCGGGAAG--AAAUUACAGCUGCCGCCG--CACAGCUGCUCGCGGAG--- -----....(.(((((((.......(((...))).......-.(((((.(((((------((((.((.--...))....)))))))))--.))))).))))))).).--- ( -38.50, z-score = -1.91, R) >droSec1.super_31 274924 91 + 568655 -----GUAGUGUGCGAGUCUCGUGGGCCAAAGGCGAAAAAA-CGCUGUUCGGUG------GCGGGAAG--AAAUUACAGCUGCCGCCG--AACAGCUGCUCGCGGAG--- -----....(.(((((((.......(((...))).......-.(((((((((((------((((.((.--...))....)))))))))--)))))).))))))).).--- ( -42.90, z-score = -3.74, R) >droYak2.chr3R 28555018 93 + 28832112 -----UUAGUGUGCGAGUCUCGUGGGCCAAAGGCAAAAAA--CGCUGUUUGGUG------GCGGGAAG--AAAUUACAGCUGCCGCCG--CACAGCUGCUCGCCUCGGAG -----...(.(.((((((...((..(((...))).....)--)(((((.(((((------((((.((.--...))....)))))))))--.))))).))))))).).... ( -36.60, z-score = -1.32, R) >droEre2.scaffold_4820 10119882 93 - 10470090 -----UUAGUGUGCGAGUCUCGUGGGCCAAAGGCAAAAAA--CGCUGUUCGGUG------GCGGGAAG--AAAUUACAGCUGCCGCCG--CACAGCUGCUCGCAGCGGAG -----...((.(((((((...((..(((...))).....)--)(((((.(((((------((((.((.--...))....)))))))))--.))))).))))))))).... ( -39.80, z-score = -2.10, R) >dp4.chr2 14608309 110 - 30794189 UGGGUGUCUGGUCCUGGGUCCGCGGGGCACAAACAACGCUGUCGGUGGCGGGCGUAAAGCGCGCGAAGCCAAUUCUCAGCUGCCGCCUGUCCCAGCUGCUUGACGCAGCG (((((((.((((((((......)))))).)).)))........((((((((((((.....))))(((.....)))....))))))))...))))(((((.....))))). ( -46.10, z-score = 0.35, R) >droWil1.scaffold_181089 10166128 72 + 12369635 ---------------UUUGUUGUGGGGCA-AGCCGAAA-------------GCG-------CGCGAACUAAAUUCACAGCUGCCGCUG--CACAGUGUCCUUAAACUAUA ---------------...(((..((((((-.(((....-------------).)-------)..............((((....))))--.....))))))..))).... ( -17.70, z-score = 0.66, R) >consensus _____GUAGUGUGCGAGUCUCGUGGGCCAAAGGCGAAAAA__CGCUGUUCGGUG______GCGGGAAG__AAAUUACAGCUGCCGCCG__CACAGCUGCUCGCCGCGGAG ............(((((((((((..(((...)))........((((....))))......))))))..........((((((..........)))))))))))....... (-15.36 = -17.40 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:42 2011