| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,615,898 – 27,615,990 |
| Length | 92 |
| Max. P | 0.708431 |
| Location | 27,615,898 – 27,615,990 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 94.10 |
| Shannon entropy | 0.10707 |
| G+C content | 0.31675 |
| Mean single sequence MFE | -19.52 |
| Consensus MFE | -15.85 |
| Energy contribution | -15.52 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.708431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27615898 92 - 27905053 UAUACUAUAUAAAUACAAUUAUAUGGUACUGUAAACGUGCAACUUAACGCUUCUUAUAGAUUAUGAGUGUGUUUCUUUCUGCCUACGUCCGU ..((((((((((......))))))))))......(((((((....(((((..((((((...)))))).)))))......)))..)))).... ( -18.60, z-score = -1.79, R) >droSim1.chr3R 27233772 92 - 27517382 UAUACUAUAUAAAUACAAUUAUAUGGUACUGUAAACGUGCAACUUAACGCUUCUUAUAGAUUAUGAGUGUGUUUCUUUCUGCCUACGUCCGU ..((((((((((......))))))))))......(((((((....(((((..((((((...)))))).)))))......)))..)))).... ( -18.60, z-score = -1.79, R) >droSec1.super_31 270455 92 - 568655 UAUACUAUAUAAAUACAAUUAUAUGGUACUGUAAACGUGCAACUUAACGCUUCUUAUAGAUUAUGAGUGUGUUUCUUUCUGCCUACGUCCGU ..((((((((((......))))))))))......(((((((....(((((..((((((...)))))).)))))......)))..)))).... ( -18.60, z-score = -1.79, R) >droYak2.chr3R 28550542 90 - 28832112 UAUACUAUAUAAAUACAAUUAUAUGGUACUGUAAACGUGCAACUUAACGCUUCUUAUAGAUUAUGAGUGUGUUUCUUU--GUCUGCGUCCGU ..((((((((((......))))))))))......((((((((...(((((..((((((...)))))).)))))...))--))..)))).... ( -19.90, z-score = -1.99, R) >droEre2.scaffold_4820 10115366 90 + 10470090 UAUACUAUAUAAAUACAAUUAUAUGGUACUGUAAACGUGCAACUUAACGCUUCUUAUAGAUUAUGAGUGUGUUUCUUU--GUCUGCGUCCGU ..((((((((((......))))))))))......((((((((...(((((..((((((...)))))).)))))...))--))..)))).... ( -19.90, z-score = -1.99, R) >droAna3.scaffold_12911 1894479 90 + 5364042 UAUACUAUAUAAAUACAAUUAUAUGGUACUUUAAACGUGCAACUUAACGCAUCUUAGUAUUUAUGAGUGUGUUUCUUU--GUUUGCGUUCAU ..((((((((((......)))))))))).....(((((((((...((((((.((((.......))))))))))...))--))..)))))... ( -21.50, z-score = -2.93, R) >consensus UAUACUAUAUAAAUACAAUUAUAUGGUACUGUAAACGUGCAACUUAACGCUUCUUAUAGAUUAUGAGUGUGUUUCUUU__GCCUACGUCCGU ..((((((((((......))))))))))......((((((.....(((((..(((((.....))))).))))).......))..)))).... (-15.85 = -15.52 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:41 2011