| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,537,880 – 27,537,987 |
| Length | 107 |
| Max. P | 0.559025 |
| Location | 27,537,880 – 27,537,987 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 69.63 |
| Shannon entropy | 0.52577 |
| G+C content | 0.40370 |
| Mean single sequence MFE | -20.90 |
| Consensus MFE | -7.28 |
| Energy contribution | -8.72 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27537880 107 - 27905053 GACUGGUGAAAAAUUGGCUUGCAUAACCCGCCAUACCCUCCAUUGAUCUUUCCUUGCACACCAUUUUAUUGUUUCGCAAGCUUA------CAUUAGCUUGGAAACUAAUUUCG- ...(((((......((((...........)))).......((..((....))..))..))))).......(((((.((((((..------....)))))))))))........- ( -23.60, z-score = -2.75, R) >droPer1.super_0 3827039 93 - 11822988 -------------UUGCCUGGCAU--CCUGGCAUUACUUUUA--GGCCUUAUUUAUAAACCCUUAAGAACGUCCAAUAUACAUAUG----GUUUCGAUUCAAUGUUAGAUUUGG -------------.((((.((...--)).))))...(((..(--((..(((....)))..))).))).....((((...((((.((----(.......))))))).....)))) ( -13.20, z-score = 0.98, R) >droYak2.chr3R 28471725 110 - 28832112 ---GACUGACUGAUUGGCUUGCAUAACCCUGCAUACCCUCUAUAGAUCUUUCCUUGCACACCUUUUUAUUGUUUCGCAAGCUUGGAAACUAAUCAGCUCGGAAACUAAUUUCG- ---..((((((((((((..((((......)))).............(((...((((((((.........)))...)))))...)))..)))))))).))))............- ( -22.70, z-score = -2.41, R) >droSec1.super_31 192385 102 - 568655 ----GGUG-AAAAUUGGCUUGCAUAACCCGCCAUACCCUCCAUUGAUCUUUCCUUGCACACCUUUUUAUUGUUUCGCAAGCUUA------CAUUAGCUUGGAAACUAAUUUCG- ----((((-.....((((...........)))).......((..((....))..))..))))........(((((.((((((..------....)))))))))))........- ( -22.50, z-score = -2.80, R) >droSim1.chr3R 27152846 102 - 27517382 ----GGUG-AAAAUUGGCUUGCAUAACCCGCCAUACCCUCCAUUGAUCUUUCCUUGCACACCUUUUUAUUGUUUCGCAAGCUUA------CAUUAGCUUGGAAACUAAUUUCG- ----((((-.....((((...........)))).......((..((....))..))..))))........(((((.((((((..------....)))))))))))........- ( -22.50, z-score = -2.80, R) >consensus ____GGUG_AAAAUUGGCUUGCAUAACCCGCCAUACCCUCCAUUGAUCUUUCCUUGCACACCUUUUUAUUGUUUCGCAAGCUUA______CAUUAGCUUGGAAACUAAUUUCG_ ..............((((...........)))).....................................(((((.((((((............)))))))))))......... ( -7.28 = -8.72 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:35 2011