| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,537,742 – 27,537,845 |
| Length | 103 |
| Max. P | 0.505099 |
| Location | 27,537,742 – 27,537,845 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 75.21 |
| Shannon entropy | 0.47287 |
| G+C content | 0.57943 |
| Mean single sequence MFE | -30.98 |
| Consensus MFE | -16.81 |
| Energy contribution | -17.34 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27537742 103 - 27905053 UGAAUCACCGCUGAAGUGAUUCAGCAGGGCGAUCCAAAUGCAUCCCUCGGUUGCCUAGGGCCCACCCCUUUUAA--CCCCGCU--CUGUAGCCAGACAAUUUGCAUU ((.(((.((((((((....)))))).))..))).))((((((......(((((...((((.....))))..)))--))..(.(--(((....)))))....)))))) ( -30.80, z-score = -1.80, R) >droAna3.scaffold_12911 1810119 102 + 5364042 UGAGUCAUCCGAGAAGUGAAUCAGCAGGGCGAUCGCAGUGCAUCCCUCCGAGCUGCCGAGCUCUGCCUCCCUCG--GCCCA---AAAGUCCCAAAGCCAUUUGCAUC (((.((((.......)))).)))(((((((....(((((.(........).)))))...))))))).......(--((...---...........)))......... ( -25.04, z-score = 0.72, R) >droEre2.scaffold_4820 10031201 98 + 10470090 UGAGUCACC--UGCAGUGAUUCAGCAGGGCGAUCCAACUGCAUCCCCCGGUUGCCUAGGG-CCACCCCCCCA----GUCCGC--ACUGUGGCCAGACAGUUUGCAUU ((((((((.--....))))))))(((((((((((..............))))))))..((-((((......(----((....--)))))))))........)))... ( -31.04, z-score = -0.21, R) >droYak2.chr3R 28471583 107 - 28832112 UGAAUCACCGCCGCAGUGAUUCAGCAGGGCGCUCCAACUGCAUCCCCCGGCUGCCUAGGGCCCACCCCUUCUCAGCCACCACCCACUGCAGCCAGACAAUUUGCAUU ((((((((.......))))))))((((((.((.......)).......(((((...((((.....))))...)))))....))).(((....)))......)))... ( -33.80, z-score = -1.92, R) >droSec1.super_31 192254 96 - 568655 UGAAUCACCGCUGAAGUGAUUCAGCAGGGCGCUCCAAAUGCAUCCCUCGGUUGCCUAGGGCCCACCCCUUUUAA--CCCCGCUGUCUGUAGCCAGACA--------- .(((((((.......)))))))(((((((.((.......))..)))).(((((...((((.....))))..)))--))..)))(((((....))))).--------- ( -32.40, z-score = -2.16, R) >droSim1.chr3R 27152706 105 - 27517382 UGAAUCACCGCCGAAGUGAUUCAGCAGGGCGCUCCAAAUGCAUCCCUCGGUUGCCUAGGGCCCACCCCUUUUAA--CCCCGCUGUCUGUAGCCAGACAAUUUGCAUU ((((((((.......))))))))((((((.((.......))..)))..(((((...((((.....))))..)))--))....((((((....))))))...)))... ( -32.80, z-score = -2.05, R) >consensus UGAAUCACCGCUGAAGUGAUUCAGCAGGGCGAUCCAAAUGCAUCCCUCGGUUGCCUAGGGCCCACCCCUUCUAA__CCCCGCU_ACUGUAGCCAGACAAUUUGCAUU ((((((((.......))))))))((((((..............)))..((((((..((((.....))))..................))))))........)))... (-16.81 = -17.34 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:34 2011