| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,533,121 – 27,533,211 |
| Length | 90 |
| Max. P | 0.815485 |
| Location | 27,533,121 – 27,533,211 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 85.73 |
| Shannon entropy | 0.26154 |
| G+C content | 0.46342 |
| Mean single sequence MFE | -27.81 |
| Consensus MFE | -20.94 |
| Energy contribution | -20.77 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27533121 90 - 27905053 AGCGA-AUUUCGCAAAUAAUUGGAGCAGUUUGCCAAC---GCUCACG--UUUUGGGCAAGGUAACA----C--UUGGCCAAGGUAAAGACAGCUCGUACGAG .(((.-....))).........((((.((((((((((---(....))--))((((.((((......----)--))).))))))))..))).))))....... ( -28.40, z-score = -2.37, R) >droPer1.super_0 3812141 102 - 11822988 AGCGAUUUUUCAUAAAUAAUUGGAGCAGCUUGCCAGCGUUGCUCACGCUUUUUGGGCAAGGUAACAGCAGCAUUUGGCCAAGGUAAGAACAGCCCUCAUAAA .....................((.((..(((((((((((.....)))))..((((.((((((.......)).)))).))))))))))....))))....... ( -25.00, z-score = 0.54, R) >dp4.chr2 14210181 102 + 30794189 AGCGAUUUUUUAUAAAUAAUUGGAGCAGCUUGCCAGCGUAGCUCACGCUUUUUGGGCAAGGUAACAGCAACAUUUGGCCAAGGUAAGAACAGCCCUCAUAAA .....................((.((..(((((((((((.....)))))..((((.((((((.......)).)))).))))))))))....))))....... ( -24.90, z-score = -0.06, R) >droAna3.scaffold_12911 1804609 87 + 5364042 AGCGA-AUUUCGCAAAUAAUUGGAGCAGUUUGCCAAC---GCUCACG--UUUUGGGCAAGGUAACA----C--UUUGCCAAGGUAAAGACAGCUCUGAU--- .(((.-....))).....((..((((.((((((((((---(....))--))...(((((((.....----)--))))))..))))..))).))))..))--- ( -30.50, z-score = -3.39, R) >droEre2.scaffold_4820 10026523 87 + 10470090 AGCGA-AUUUCGCAAAUAAUUGGAGCAGUUUGCCAGC---GCUCACG--UUUUGGGCAAGGUAACA----C--UUGGCCAAGGUAAAGACAGCUCGGAU--- .(((.-....))).....(((.((((.((((((((((---(....))--))((((.((((......----)--))).))))))))..))).)))).)))--- ( -29.90, z-score = -2.77, R) >droYak2.chr3R 28466463 89 - 28832112 AGCGA-AUUUCGCAAAUAAUUGGAGCAGUUUGCCAAC---GCUCACG--UUUUGGGCAAGGUAACA----CAUUUGGCCAAGGUAAAGACGGCUCGAAU--- .(((.-....))).....(((.((((.((((((((((---(....))--))((((.((((......----..)))).))))))))..))).)))).)))--- ( -27.00, z-score = -2.21, R) >droSec1.super_31 187550 90 - 568655 AGCGA-AUUUCGCAAAUAAUUGGAGCAGUUUGCCAAC---GCUCACG--UUUUGGGCAAGGUAACA----C--UUGGCCAAGGUAAAGACAGCUCGUACGAG .(((.-....))).........((((.((((((((((---(....))--))((((.((((......----)--))).))))))))..))).))))....... ( -28.40, z-score = -2.37, R) >droSim1.chr3R 27148111 90 - 27517382 AGCGA-AUUUCGCAAAUAAUUGGAGCAGUUUGCCAAC---GCUCACG--UUUUGGGCAAGGUAACA----C--UUGGCCAAGGUAAAGACAGCUCGUACGAG .(((.-....))).........((((.((((((((((---(....))--))((((.((((......----)--))).))))))))..))).))))....... ( -28.40, z-score = -2.37, R) >consensus AGCGA_AUUUCGCAAAUAAUUGGAGCAGUUUGCCAAC___GCUCACG__UUUUGGGCAAGGUAACA____C__UUGGCCAAGGUAAAGACAGCUCGUAU_A_ .((((....)))).........((((..((((((......(((((.......)))))..(((..............)))..))))))....))))....... (-20.94 = -20.77 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:31 2011