| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,512,729 – 27,512,829 |
| Length | 100 |
| Max. P | 0.759975 |
| Location | 27,512,729 – 27,512,829 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.17 |
| Shannon entropy | 0.39248 |
| G+C content | 0.47668 |
| Mean single sequence MFE | -34.10 |
| Consensus MFE | -18.80 |
| Energy contribution | -18.97 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.759975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27512729 100 + 27905053 GACUUGGACGAUGGGCUUUCUUCUUGGGCUGUUAUGACGGCUG------GUUGUUGUUGCCUUUAAGGCCGCAACCUGUUCAAGCACUGGAAAAAA---UAAUCCAAGA---------- ..((((((..((....(((((.((((((((((....))))))(------(((((....(((.....))).))))))....))))....)))))..)---)..)))))).---------- ( -31.30, z-score = -1.71, R) >droSim1.chr3R 27132562 106 + 27517382 GACUUGGACGAUGGGCUUUCUUCUUGGGCUGUUAUGACGGCUGCUUGUUGUUGUUGUUGCCUUUAAGGCCGCAACCUGUUCAAGCACUGGAAGAAA---UAGUCCGAGA---------- ..(((((((.......((((((((.(((((((....))))))(((((.....(((((.(((.....))).))))).....))))).).))))))))---..))))))).---------- ( -42.10, z-score = -3.94, R) >droSec1.super_31 171886 106 + 568655 GACUUGGACGAUGGGCUUUCUUCUUGGGCUGUUAUGACGGCUGCUUGUUGUUGUUGUUGCCUUUAAGGCCGCAACCUGUUCAAGCACUGGAAGAAA---UAGUCCGAGA---------- ..(((((((.......((((((((.(((((((....))))))(((((.....(((((.(((.....))).))))).....))))).).))))))))---..))))))).---------- ( -42.10, z-score = -3.94, R) >droYak2.chr3R 28450231 101 + 28832112 GACUUGGACGAUGGGCUUUCUUCUUGGGCUGUUUUGACGGCUC------GUUGUUGUUGCCUUUAAGGCCGUAACCUGUUCAAGCACUGAACGAAA---UUAGUGAGUAC--------- ..(((((((...((((........((((((((....)))))))------)........))))...(((......))))))))))((((((......---)))))).....--------- ( -29.89, z-score = -1.41, R) >droEre2.scaffold_4820 10008131 100 - 10470090 GACUUGGACGAUGGGCUUUCUUCUUGGGCUGUUGUGACGGCUG------GUUGUUGUUGCCUUUAAGGCCGUAACCUGCUCGAACACUGAGCAAAA---AAGUCGAGGA---------- ((((((((((((((.((........)).))))))).(((((((------((.......))).....))))))..))((((((.....))))))...---))))).....---------- ( -31.70, z-score = -1.03, R) >droAna3.scaffold_12911 1786088 118 - 5364042 GACUUGAGCGAUGGGCUUUCUUCGGGCAUUGUUAUUGUUUUUA-UUGUGGCUGUUGUUGGUUUUAAGGCCAUAACCUGCUGGAACACUGGCCAAAAAGUCAAUCCCGUGGAAUUAAAUU .....((((.....))))(((.((((.((((...((.......-...(((((..((((((((....))))....((....))))))..)))))..))..)))))))).)))........ ( -27.50, z-score = 0.67, R) >consensus GACUUGGACGAUGGGCUUUCUUCUUGGGCUGUUAUGACGGCUG______GUUGUUGUUGCCUUUAAGGCCGCAACCUGUUCAAGCACUGGAAAAAA___UAAUCCAAGA__________ ..((((((((.((((((((......((((....((((((((........)))))))).))))..)))))).))...))))))))................................... (-18.80 = -18.97 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:30 2011