Locus 12352

Sequence ID dm3.chr3R
Location 27,510,912 – 27,510,998
Length 86
Max. P 0.986508
window16978

overview

Window 8

Location 27,510,912 – 27,510,998
Length 86
Sequences 7
Columns 88
Reading direction reverse
Mean pairwise identity 69.68
Shannon entropy 0.62182
G+C content 0.49567
Mean single sequence MFE -25.73
Consensus MFE -13.18
Energy contribution -15.00
Covariance contribution 1.82
Combinations/Pair 1.39
Mean z-score -1.77
Structure conservation index 0.51
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.24
SVM RNA-class probability 0.986508
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 27510912 86 - 27905053
UAUGCACGAAGAUCCCCGGCGGGAGGGUAAGAAAAUUGUCUUGGCCU--UCUGCACGUGCGUUUUCCACGGCAGCGAAAAGGGAAAAU
...(((((..(.....).((((((((.(((((......))))).)))--))))).)))))(((((((.((....)).....))))))) ( -30.60, z-score =  -1.85, R)
>droSim1.chr3R 27130759 86 - 27517382
UAUGCACGAAGAUCCCCAGCGGGAGGGUAAGAAAAUUGUCUUGGCCU--UCUGCACGUGCGUUUUCCACGGCAGCGAAGAGGGAAAAC
...(((((..(.....).((((((((.(((((......))))).)))--))))).)))))(((((((.((....)).....))))))) ( -32.10, z-score =  -2.57, R)
>droSec1.super_31 170095 86 - 568655
UAUGCACGAAGAUCCCCAGCGGGAGGGUAAGAAAAUUGUCUUGGCCC--UCUGCACGUGCGUUUUCCACGGCAGCGAAGAGGGAAAAC
...(((((..(.....).((((.(((((((((......)))).))))--))))).)))))(((((((.((....)).....))))))) ( -28.90, z-score =  -1.36, R)
>droYak2.chr3R 28448368 86 - 28832112
UAUGCACGAAGAUCCCCAGCGGGAGGGUAAGAAAAUUGUCUUGGCCU--UCUGCACGUGCGUUUUCCACGGCAGCGAAGAGGGAAAAC
...(((((..(.....).((((((((.(((((......))))).)))--))))).)))))(((((((.((....)).....))))))) ( -32.10, z-score =  -2.57, R)
>droEre2.scaffold_4820 10006282 86 + 10470090
CAUGCACGAAGAUCCCCAGCGGGAGGGUAAGAAAAUUGUCUUGGCCU--UCUGCACGUGCGUUUUCCACGGCGGCGAAGAGGGAAAAU
...(((((..(.....).((((((((.(((((......))))).)))--))))).)))))(((((((....(......)..))))))) ( -31.50, z-score =  -1.86, R)
>droWil1.scaffold_181089 9474580 72 - 12369635
-UCUUUAAGAAGUGAGCACUAUCAUUAUUAACAUAUUCCUUAGACCCCGCGUGCACGUGCAUUUUCCUUUAAG---------------
-...((((..(((((......))))).)))).......((((((......((((....)))).....))))))--------------- (  -8.10, z-score =  -0.42, R)
>droGri2.scaffold_14906 11803174 76 + 14172833
-------GGAGACGCCUUCUGGUGAACCAAGAAAAUUGUCUAAUCAU--UAUGCACGUGCAUUUUCCACG---AAGAAAAUGAACAAU
-------..(((((..((((((....)).))))...)))))......--.......((.(((((((....---..))))))).))... ( -16.80, z-score =  -1.76, R)
>consensus
UAUGCACGAAGAUCCCCAGCGGGAGGGUAAGAAAAUUGUCUUGGCCU__UCUGCACGUGCGUUUUCCACGGCAGCGAAGAGGGAAAAC
...(((((....((((....))))((.(((((......))))).)).........)))))(((((((..............))))))) (-13.18 = -15.00 +   1.82)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:29 2011