| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,374,539 – 9,374,631 |
| Length | 92 |
| Max. P | 0.636080 |
| Location | 9,374,539 – 9,374,631 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 77.85 |
| Shannon entropy | 0.38844 |
| G+C content | 0.59458 |
| Mean single sequence MFE | -31.44 |
| Consensus MFE | -18.73 |
| Energy contribution | -19.29 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.636080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9374539 92 + 23011544 UCCAUCGCCACCGC---UCACAC-----CCGCCCCGCAAUUAUCUGUCCGCAAAACUUUCAACUAACGUGGUCGGAUGGGGUAAAACCC--GGCUGGAGGCG .....((((.((((---(.....-----..(((((......(((((.((((................)))).)))))))))).......--))).)).)))) ( -28.83, z-score = -1.12, R) >droSim1.chr2L 9152028 97 + 22036055 GCCAUCGCCUCCGCACCUCACAC-----CCGCCCCGCAAUUAUCUGUCCGCAAAACUUUCAACUAACGUGGUCGGAUGGGGUAAAACCCCCGGCUGGAGGCG .....(((((((((.........-----.............(((((.((((................)))).)))))((((......)))).)).))))))) ( -33.09, z-score = -2.14, R) >droSec1.super_3 4831949 97 + 7220098 GCCAUCGCCUCCGCACCUCACAC-----CCGCCCCGCAAUUAUCUGUCCGUAAAACUUUCAACUAACGUGGUCGGAUGGGGUAAAAGCCCCGGCUGGAGGCG .....(((((((((.........-----.............(((((.(((.....).....((....)))).)))))(((((....))))).)).))))))) ( -31.90, z-score = -1.47, R) >droYak2.chr2L 12047306 100 + 22324452 UCCAUCGCCUCCACCGCCUGCGCUGCCCCCGCCCAGCAAUUAUCUGUCCGCAAAACUUUCAACUAACGUGGUCGGAUGGGGAAAAACCC--GGCUGGAGGCG .....((((((((..(((...((((........))))....(((((.((((................)))).)))))(((......)))--))))))))))) ( -38.79, z-score = -2.97, R) >droAna3.scaffold_12943 727039 86 + 5039921 --------CCCAUCACCUCUCGC-----CCCCCGCGCAAUUAUCUGUCCGUAAAACUUUCAACAAAAAUGGG-AGACGGAGGACGGCUG--AGGAGGAGGCG --------............(((-----(((((...((.(..(((.(((((....((..((.......))..-))))))))))..).))--.)).)).)))) ( -24.60, z-score = -0.18, R) >consensus GCCAUCGCCUCCGCACCUCACAC_____CCGCCCCGCAAUUAUCUGUCCGCAAAACUUUCAACUAACGUGGUCGGAUGGGGUAAAACCC__GGCUGGAGGCG .....((((((((.................(((.......((((((.((((................)))).))))))(((.....)))..))))))))))) (-18.73 = -19.29 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:05 2011