| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,498,238 – 27,498,330 |
| Length | 92 |
| Max. P | 0.548952 |
| Location | 27,498,238 – 27,498,330 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 64.20 |
| Shannon entropy | 0.56361 |
| G+C content | 0.46387 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -10.34 |
| Energy contribution | -11.02 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548952 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27498238 92 + 27905053 --------------------------GGUGACAUUAAUUGUGCUAUUAUUGCGCCCGCAGC-UACUAAUAAUAUGGGCUAUAGGUGAUGUGAUAUUUGCGCUCUCUGCCGCCUCCACUC --------------------------((((.((......((((...(((..(((((..(((-(............))))...)).).))..)))...))))....)).))))....... ( -21.40, z-score = 0.32, R) >droSim1.chr3R 27118234 91 + 27517382 --------------------------GGUGGCAUUGAUUGUGCCAUUAUUGCGCCCGCAGC-UGCUAAUAAUAUGGGCUAUACGU-AUGUGAUUUUUGCGCUCUCUGCCGCCUCCACUC --------------------------(((((((..((..((((.(..((..((..((.(((-(............))))...)).-.))..))..).))))..)))))))))....... ( -26.80, z-score = -0.84, R) >droYak2.chr3R 28435626 91 + 28832112 --------------------------GGUGGCAUUGAUUGAAAUAUUACUGUGCCCGCAGC-UGCUAAUAAUAUGGGCUAUAAAU-CUGUGAUUUUUUCGCUCUUUGCCGCCUCCACUC --------------------------(((((((..((.(((((.((((((((((((((...-.)).........)))).)))...-..)))))..))))).))..)))))))....... ( -27.30, z-score = -3.19, R) >droEre2.scaffold_4820 9993515 91 - 10470090 --------------------------GGUGGCACUGAGUGACAUAAUAUUGUGCCCGCAGC-UGCUAAUAAUAUAGGCUAUAAAU-CUGUCAUUUUUGCGCUCUUUGCCGCCUCCACUC --------------------------(((((((..(((((.((..(((((((....((...-.))..))))))).(((.......-..))).....)))))))..)))))))....... ( -27.90, z-score = -2.65, R) >droAna3.scaffold_12911 1768407 119 - 5364042 GUUUCCACUGAUUGCCGUAUCAAGAAUGUACAAUUUAACACGUACAUAUAGAGGGGGUGGCACUUUUGUGCCAUUAUUUUGACGGUAAUUGUGCUUUGCGCUCUUUGUCGCCGCCACUC .....(((.((((((((..((((((((((((..........))))))........((((((((....)))))))).)))))))))))))))))....((((.....).)))........ ( -34.10, z-score = -1.66, R) >consensus __________________________GGUGGCAUUGAUUGAGAUAUUAUUGCGCCCGCAGC_UGCUAAUAAUAUGGGCUAUAAGU_AUGUGAUUUUUGCGCUCUUUGCCGCCUCCACUC ..........................(((((((..((.((((..(((((...(((((.(............).)))))..........)))))...)))).))..)))))))....... (-10.34 = -11.02 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:25 2011