| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,497,466 – 27,497,575 |
| Length | 109 |
| Max. P | 0.568089 |
| Location | 27,497,466 – 27,497,575 |
|---|---|
| Length | 109 |
| Sequences | 8 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 55.33 |
| Shannon entropy | 0.89296 |
| G+C content | 0.46145 |
| Mean single sequence MFE | -19.63 |
| Consensus MFE | -4.88 |
| Energy contribution | -5.38 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.88 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27497466 109 - 27905053 -----UCGAUUUUCUUAAGCAUAAUU--CUCAAAAUA-AUUUCUACAAACUUUAGUCACCACUCACCGUAGGUGGCUCCUCAUAUAUGAGAGCCAGCCGCUCGGCCGCCUCCUCCUC -----.............((......--.........-...............(((....)))..(((..((((((((.(((....))))))))).))...)))..))......... ( -19.00, z-score = -0.91, R) >anoGam1.chr2R 30533305 90 - 62725911 ---------------------CAAUCAAUUUAAGGAACAUUCCAGCUAAACCUCAUUCCUACUCACCUUUGGUGGAUCUCCG-GGAAAAUCGUUAACGAC--AUCCGGCUCUUG--- ---------------------............(((....)))((((........((((((..((((...))))..)....)-))))..(((....))).--....))))....--- ( -14.60, z-score = 0.16, R) >droWil1.scaffold_181089 9458723 85 - 12369635 --------------------------AGUAUAAAG---AUAUUUGAGAACAUACCCUUGGACCUUCC-UGAUAAAUUUCUCUGAGACGCUGCUCAACUUCCUGCUCCUCCUCUUC-- --------------------------((((..(((---......(((((.........((.....))-........)))))((((......)))).)))..))))..........-- ( -11.33, z-score = -0.07, R) >droAna3.scaffold_12911 1767642 90 + 5364042 ------------------UUAUAAAUAAUAUAAAGUG-CUCGUAAUAAA--------AAUACUCACCAUAGGCGGCUCUUGCCAGAUCACUCGCAAUCUCUGUAUGGCCUCCUCUUC ------------------................(((-...(((.....--------..))).)))...(((.((((..(((.((((........))))..))).)))).))).... ( -12.40, z-score = -0.17, R) >droEre2.scaffold_4820 9992679 116 + 10470090 AAUGUUCGAGACGGCAAGGUACAACUAAUUCAAAGUA-AUUUCUACCAACUUUUGUCACCACUCACCGUAGGUGGCUCCUCAUAUAUGAGAACCAGCCGCUCGGCCGCCUCCUCCUC ...(..((((.((((..(((.................-................((((((((.....)).))))))..((((....)))).))).))))))))..)........... ( -29.60, z-score = -2.18, R) >droYak2.chr3R 28434832 111 - 28832112 AAUGC-----ACGGCAAGGUACCACUAAUUCAAGGUA-AUUUCUACCAACUUUUGUCACCACUCACCGUUGGUGGCUCCUCAUAAAUGAGAACCAGCCGCUCGGCCGCCUCCUCCUC .....-----..(((..(((.............((((-.....)))).......(((((((........)))))))..((((....)))).))).(((....))).)))........ ( -28.40, z-score = -1.87, R) >droSec1.super_31 157318 100 - 568655 --------------UCAAUCAUAAUU--CUCAAAAUA-AUUUCUACCAACUUUAGUCACCACUCACCGUAGGUGGCUCCUCAUAUAUGAGAGCCAGCCGCUCGGCUGCCUCCUCCUC --------------....((((((((--.....))).-...............(((((((((.....)).))))))).......)))))(((.(((((....))))).)))...... ( -22.80, z-score = -3.55, R) >droSim1.chr3R 27117480 100 - 27517382 --------------UCAAUCGUAAUU--CUCAAAAUA-AUUUCUACCAACUUUAGUCACCACUCACCGUAGGUGGCUCCUCAUAUAUGAGAGCCAGCCGCUCGGCCGCCUCCUCCUC --------------............--.........-...............(((((((((.....)).)))))))..........(((.((..(((....))).)))))...... ( -18.90, z-score = -1.87, R) >consensus ________________A_GCAUAAUUAAUUCAAAGUA_AUUUCUACCAACUUUAGUCACCACUCACCGUAGGUGGCUCCUCAUAUAUGAGAGCCAGCCGCUCGGCCGCCUCCUCCUC .....................................................................((((((((.........................))))))))....... ( -4.88 = -5.38 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:24 2011