| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,491,349 – 27,491,447 |
| Length | 98 |
| Max. P | 0.808525 |
| Location | 27,491,349 – 27,491,447 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 88.62 |
| Shannon entropy | 0.19637 |
| G+C content | 0.62481 |
| Mean single sequence MFE | -37.56 |
| Consensus MFE | -34.17 |
| Energy contribution | -34.37 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.808525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27491349 98 - 27905053 CGUGGCAAUCGGAUUCCCCCGAGGGUCCGCACAUGGCCCACG--------UAUCCACGUAUCCGCAUGAGGACUCGCACACAGAGUGCGGACCAUGGCCAAACCAA----- ..((((..((((......)))).(((((((((.((.....((--------..(((.(((......))).)))..))....))..)))))))))...))))......----- ( -37.20, z-score = -1.82, R) >droSim1.chr3R 27110902 106 - 27517382 CGUGGCAAUCGGAUUCCCCCGAGGGUCCGCACAUGGCCCACGUAUCCAAGUAUCCACGUAUCCGCAUGAGGACUCGCACACGGAGUGCGGACCACGGCCAAGCCAA----- ..((((..((((......)))).((((((((((((.....))).........(((.((..(((......)))..)).....))))))))))))........)))).----- ( -38.10, z-score = -0.98, R) >droSec1.super_31 151277 106 - 568655 CGUGGCAAUCGGAUUCCCCCGAGGGUCCGCACAUGGCCCACGUAUCCAAGUAUCCACUUAUCCGCAUGAGGACUCGCACACGAAGUGCGGACCACGGCCAAACCAA----- ..((((..((((......)))).(((((((((.(((...((........))..)))....(((......))).(((....))).)))))))))...))))......----- ( -36.10, z-score = -1.54, R) >droYak2.chr3R 28428636 104 - 28832112 CGUGGCAAUCGGAUUCCCCCGAGGGUCCGCACAUGGCCCACGUAUCCCUCUAUCCACGUAUCCGCAUGAGGACUCGCACACGGAGUGCGGACCACGGCCAAACC------- ..((((..((((......)))).((((((((((((.....))).........(((.((..(((......)))..)).....))))))))))))...))))....------- ( -37.90, z-score = -1.14, R) >droEre2.scaffold_4820 9986719 103 + 10470090 CGUGGCAAUCGGAUUCCCCCGAGGGUCCGCACAUGGCCCACG--------UACCCACGAAUCCGCAAGAGGACUCGCACACGGAGUGCGGACCACGGCCAAGCCCCACCAA .((((...((((......)))).((((((((((((.....))--------).((..(((.(((......))).))).....)).)))))))))..(((...)))))))... ( -38.50, z-score = -1.47, R) >consensus CGUGGCAAUCGGAUUCCCCCGAGGGUCCGCACAUGGCCCACGUAUCC___UAUCCACGUAUCCGCAUGAGGACUCGCACACGGAGUGCGGACCACGGCCAAACCAA_____ ..((((..((((......)))).(((((((((.(((.................)))((..(((......)))..))........)))))))))...))))........... (-34.17 = -34.37 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:23 2011