| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,463,325 – 27,463,401 |
| Length | 76 |
| Max. P | 0.878945 |
| Location | 27,463,325 – 27,463,401 |
|---|---|
| Length | 76 |
| Sequences | 7 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 59.14 |
| Shannon entropy | 0.82012 |
| G+C content | 0.46021 |
| Mean single sequence MFE | -17.79 |
| Consensus MFE | -5.48 |
| Energy contribution | -5.67 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.80 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.878945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27463325 76 + 27905053 GCCGAAUGUCUCGACCCGUUUGAGUUCUGUGGAAACAUUCGAGCGGGCAACUCCAUACAUUCGUAUAGACACACAA ..(((((((...(((((((((((.....(((....))))))))))))....))...)))))))............. ( -23.10, z-score = -2.40, R) >droSim1.chr3R 27083249 76 + 27517382 GCCGAAUGUCCCGACCCGUUUGAGUUCUGUGGAAACAUUCGAGCGGGCAACUCCAUACAUUCGUAUAGACACACAA ..(((((((...(((((((((((.....(((....))))))))))))....))...)))))))............. ( -23.10, z-score = -2.46, R) >droSec1.super_31 123634 76 + 568655 GCCGAAUGUCCCGACCCGUUUGAGUUCUGUGGAAGCAUUCGAGCGGGCAACUCCAUACAAUCGUAUAGACACACAA ......((((..(.(((((((((((.((.....)).))))))))))))......((((....)))).))))..... ( -22.00, z-score = -1.83, R) >droEre2.scaffold_4820 9958758 63 - 10470090 -------------ACCCGCUUGAGUUUUGUGGAAACAUUCGAGCAAGCAACUCCAUGCAUUCGUAUAGACACACAA -------------....(((((......(((....))).....)))))...((.((((....)))).))....... ( -13.70, z-score = -1.40, R) >droAna3.scaffold_12911 1720947 60 - 5364042 -----GCCAACUGUUCGGUUUGAGUUUUGUGGAAAUAUUCGAACACACACACGUUCGGGCGGCAG----------- -----(((..(((..((((.((.(((((((....)))...)))).)).)).))..)))..)))..----------- ( -16.30, z-score = -1.20, R) >droWil1.scaffold_181089 9422086 69 + 12369635 -----GUUAACUGUCCCGUUUUGAGUUUGUUGAUACAUUCAAGCAAAUAUACUCAUACGCCAUGUUGACGGCAU-- -----((((((.....(((..((((((((((((.....)).)))))....))))).)))....)))))).....-- ( -15.50, z-score = -1.60, R) >droMoj3.scaffold_6540 22052107 70 - 34148556 -----GUUAACUGUCCCAUUUGAGUU-UGUGGAUACAUUUGAGAGAACUGCUACACACACACACAUAUGCACAAAA -----......(((..(((.((.((.-((((..(((((((....))).)).))..)))).)).)).))).)))... ( -10.80, z-score = 0.24, R) >consensus _____AUGAACCGACCCGUUUGAGUUCUGUGGAAACAUUCGAGCGAGCAACUCCAUACACUCGUAUAGACACACAA .................(((((((...(((....))))))))))................................ ( -5.48 = -5.67 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:22 2011