| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,452,616 – 27,452,678 |
| Length | 62 |
| Max. P | 0.574152 |
| Location | 27,452,616 – 27,452,678 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 55.98 |
| Shannon entropy | 0.74494 |
| G+C content | 0.57289 |
| Mean single sequence MFE | -20.24 |
| Consensus MFE | -8.18 |
| Energy contribution | -8.70 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.57 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27452616 62 + 27905053 GGGGUGCGGUGGUGCGCCCCC---------GGGGGUGGUGCUAUAGUUUAAGCAUACCAAGCAUCAAUGCC ..(((((..((((.(((((..---------..)))))(((((........))))))))).)))))...... ( -26.10, z-score = -1.09, R) >droSec1.super_31 112948 55 + 568655 -------GGUGGUGCGCCCCA---------GGGGGUGGUGUUGUAGUUUAAGCAUACCGAGCAUCAAUGCC -------..((((((((((..---------..))))(((((.((.......)))))))..))))))..... ( -20.20, z-score = -1.37, R) >droYak2.chr3R 28388962 64 + 28832112 -------GGUGGUCUGCCCCCCACCUGUGAGGGGUUGGUGCUGUAGUUUAAGCAUGCCCAGCAUCAAUGCU -------(((((........))))).....((.((((((((((..((........)).)))))))))).)) ( -22.60, z-score = -0.42, R) >droEre2.scaffold_4820 9948155 50 - 10470090 GGGGGUAGGUGGCGUGCCCCA---------GGGGGUGGUGCUGUAGUUAAAGCAUGCUC------------ .((((((.(...).)))))).---------..(((((.((((........)))))))))------------ ( -17.20, z-score = -0.82, R) >droWil1.scaffold_181089 9409245 62 + 12369635 UGUAUGUAGUUAGCUGCUACC--------GGCUGUUUGUA-UGUGGUAUGUCCAAAAGCAGGGUGAAUACC .((((((((....))))((((--------..((((((...-..(((.....))).)))))))))).)))). ( -15.10, z-score = -0.27, R) >consensus _G_____GGUGGUGUGCCCCC_________GGGGGUGGUGCUGUAGUUUAAGCAUACCCAGCAUCAAUGCC ..........(((.((((((...........))))))(((((........))))))))............. ( -8.18 = -8.70 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:21 2011