| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,448,562 – 27,448,655 |
| Length | 93 |
| Max. P | 0.710695 |
| Location | 27,448,562 – 27,448,655 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 67.85 |
| Shannon entropy | 0.59371 |
| G+C content | 0.56668 |
| Mean single sequence MFE | -24.82 |
| Consensus MFE | -15.05 |
| Energy contribution | -14.75 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.710695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27448562 93 + 27905053 --------------------GGCGCCAAGUGUCAGCGGAGAAUGCUGGAAAAUUCAAUAAUCCGCCGCAGGGCGCCCGUUUGUCCCCCUCGUGCCACACGUCCUCCUCGCCGU- --------------------((((((..(((...(((((((((........)))).....))))))))..)))))).............((((...)))).............- ( -25.90, z-score = 0.50, R) >droSim1.chr3R 27068445 93 + 27517382 --------------------GGCGCCAAGUGUCAGCGGAGAAUGCUGGAAAAUUCAAUAAUCCGCCGCAGGGCGCCCGAUUGUCCCCCUCGUUCCACACGUCCUCCUCGCCGU- --------------------((((....((....))((((.(((.(((((......((((((((((....))))...))))))........)))))..))).)))).))))..- ( -27.54, z-score = -0.45, R) >droSec1.super_31 108927 93 + 568655 --------------------GGCGCCAAGUGUCAGCGGAGAAUGCUGGAAAAUUCAAUAAUCCGCCGCAGGGCGCCCGAUUGUCCCCCUCGUUCCACACGUCCUCCUCGCCGU- --------------------((((....((....))((((.(((.(((((......((((((((((....))))...))))))........)))))..))).)))).))))..- ( -27.54, z-score = -0.45, R) >droEre2.scaffold_4820 9944058 81 - 10470090 --------------------GGCGCCAAGUGUCAGCGGAGAAUGCUGGAAAAUUCAAUAAUCCGCCGCAGGGCGCCCAAUUGUCCCCCAUG---CACACGUCCU---------- --------------------((((((..(((...(((((((((........)))).....))))))))..))))))...............---..........---------- ( -24.20, z-score = -0.47, R) >droAna3.scaffold_12911 1704285 81 - 5364042 --------------------GGCGCCAAGUGUUGGCGGAGAACGCUGGAAAAUUCAAUAAUCCGCCGCAGGGCGCCCAAUUGUCCCCCAUA---UAUACGACGG---------- --------------------((((((...(((.((((((......((((...))))....))))))))).))))))....((((.......---.....)))).---------- ( -26.90, z-score = -0.98, R) >dp4.chr2 14123695 89 - 30794189 --------------------GGCGCCAAGUGUCAGCGGAGAACGUUGGAAAAUUCAAUAAUCCGCCGUAGGGCGCCCAAUUGCCUUCUACU--CCAUAGCCCCAUCUGUGG--- --------------------((((((......(.(((((....((((((...))))))..))))).)...))))))...............--((((((......))))))--- ( -28.40, z-score = -1.60, R) >droPer1.super_0 3726868 89 + 11822988 --------------------GGCGCCAAGUGUCAGCGGAGAACGUUGGAAAAUUCAAUAAUCCGCCGUAGGGCGCCCAAUUGCCUUCUACU--CCAUGGCCCCAUCUGUGG--- --------------------((((((......(.(((((....((((((...))))))..))))).)...))))))...............--((((((......))))))--- ( -27.10, z-score = -0.51, R) >droWil1.scaffold_181089 9404646 106 + 12369635 GGCGCCAAGUGUUUGGUUUUGGUUUCUGGGGGUUUCGCAGAAUGUUGGAAAAUUCAAUAAUCCGCCACAGGGCGCCCAAUUGUCCCGCUUA---UAUGGGCCUCCCCGU----- ((((((..(((..(((.......(((((.(.....).)))))(((((((...)))))))..))).)))..))))))...............---.(((((....)))))----- ( -30.30, z-score = 1.13, R) >droMoj3.scaffold_6540 22024027 90 - 34148556 --------------------GGCGCCAAGUGUCAGUCAA--AUGUUGGAAAAUUCAAUAAUCCGCCAGAGGGCGCCAAUACAGUUCCCUCA--CCCGUUGUUCGCCUCCAACAC --------------------(((((...)))))......--.(((((((..................(((((.((.......)).))))).--..((.....))..))))))). ( -21.50, z-score = -1.33, R) >droGri2.scaffold_14906 11728277 81 - 14172833 --------------------GGCGCCAAGUGUCAGUCAA--AUGUUGGAAAAUUCAAUAAUCCGCCACAGCGCACCAAUAGCACUUCCCAA--CCGCCCCUCCAC--------- --------------------((((..((((((.......--.(((((((...)))))))...(((....)))........)))))).....--.)))).......--------- ( -14.50, z-score = -1.13, R) >droVir3.scaffold_13047 9669042 83 - 19223366 --------------------GGCGCCAAGUGUCAGUCAA--AUGUUGGAAAAUUCAAUAAUCCGCCACAGGGCGCCAAUUCAGCGACCCCC--CCUUACCCCAACAC------- --------------------((((((..(((...((...--.(((((((...)))))))....)))))..))))))...............--..............------- ( -19.10, z-score = -1.31, R) >consensus ____________________GGCGCCAAGUGUCAGCGGAGAAUGUUGGAAAAUUCAAUAAUCCGCCGCAGGGCGCCCAAUUGUCCCCCUCA__CCACACGUCCACCU_______ ....................((((((..(((.(((((.....)))))((....))..........)))..))))))...................................... (-15.05 = -14.75 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:19 2011