| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,437,307 – 27,437,414 |
| Length | 107 |
| Max. P | 0.613916 |
| Location | 27,437,307 – 27,437,414 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 122 |
| Reading direction | forward |
| Mean pairwise identity | 74.36 |
| Shannon entropy | 0.47747 |
| G+C content | 0.64200 |
| Mean single sequence MFE | -44.35 |
| Consensus MFE | -20.88 |
| Energy contribution | -20.30 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613916 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27437307 107 + 27905053 --------CCGCUCACGAUCCCCAUUCCGGAUC--CGGAUCCAGCAACAACGCCGCCGUGGAUGCCCAUGCUCGCACU---CUGGGCUCGCUCGCCCAGGACUUUGGCAUGGGC-GGCGGC- --------..(((...(((((((.....))...--.))))).)))......((((((......(((((((((.....(---((((((......))))))).....)))))))))-))))))- ( -49.20, z-score = -2.23, R) >droPer1.super_0 9636474 101 - 11822988 -------------CUGGAUACGGAUUUUGUGACGGCGGCGACACCACAAACGCCGAAGUGGAUGCCCAUGCACGCGGUGGCCUGGGCA---UUGCCCAGGACUUUGGCAUGGGUGGU----- -------------(((....)))..((..(..(((((.............)))))..)..)).((((((((.((.(((..(((((((.---..)))))))))).))))))))))...----- ( -41.72, z-score = -1.35, R) >dp4.chr2 22442731 101 - 30794189 -------------CUGGAUACGGAUUUUGUGACGGCGGCGACACCACAAACGCCGAAGUGGAUGCCCAUGCACGCGGUGGCCUGGGCA---UUGCCCAGGACUUUGGCAUGGGUGGU----- -------------(((....)))..((..(..(((((.............)))))..)..)).((((((((.((.(((..(((((((.---..)))))))))).))))))))))...----- ( -41.72, z-score = -1.35, R) >droAna3.scaffold_12911 1691723 112 - 5364042 GCACAUACGGUCGAGGGUUACAGGUUGCGGACCA--GGCGACAGCAACUACGCCGCAGUGGAUGCCCAUGCACGCGGUGGCCUGGGCA---UUGCCCAGGACUUUGGCAUGGGCGGC----- .(((...(((.((..((((....(((((......--.)))))...)))).)))))..)))..(((((((((.((.(((..(((((((.---..)))))))))).)))))))))))..----- ( -48.40, z-score = -1.11, R) >droEre2.scaffold_4820 9931899 107 - 10470090 --------CCACUGCCGAUCCCCAUUCCGGAUC--CGGAUCCAGCAACAACGCCGCCGUGGAUGCCCAUGCUCGCACU---CUGGGCUCGCUCGCCCAGGACUUUGGCAUGGGC-GGCGGC- --------...(((((.((((.(..((((....--))))....((......))....).))))(((((((((.....(---((((((......))))))).....)))))))))-))))).- ( -49.30, z-score = -2.19, R) >droYak2.chr3R 28373384 107 + 28832112 --------CCACUGACGAUCCCCAUUCCGGAUC--CGGAUCCAGCAACAACGCCGCCGUGGAUGCCCAUGCUCGCACC---CUGGGCUCCCUCGCCCAGGACUUUGGCAUGGGC-GGCGGC- --------...(((..(((((((.....))...--.)))))))).......((((((......(((((((((.....(---((((((......))))))).....)))))))))-))))))- ( -49.90, z-score = -2.84, R) >droSec1.super_31 97606 107 + 568655 --------CCGCUCCCGAUCCCCAUUCCGGAUC--CGGAUCCAGCAACAACGCCGCCGUGGAUGCUCAUGCUCGCACU---CUGGGCUCGCUCGCCCAGGACUUUGGCAUGGGC-GGCGGC- --------..(((((.(((((.......)))))--.)))....))......((((((......(((((((((.....(---((((((......))))))).....)))))))))-))))))- ( -48.10, z-score = -1.84, R) >droSim1.chr3R_random 1302893 109 + 1307089 --------CCGCUCACGAUCCCCAUUCCGGAUC--CGGAUCCAGCAACAACGCCGCCGUGGAUGCCCAUGCUCGCACU---CUGGGCUCGCUCGCCCAGGACUUUGGCAUGGGCAGGCAGGG --------(((((...(((((((.....))...--.))))).)))......(((.(....).((((((((((.....(---((((((......))))))).....))))))))))))).)). ( -46.70, z-score = -1.51, R) >droWil1.scaffold_181089 2968086 101 + 12369635 -------------CUGGUUACGGAUUUUGUGACGGCGGCGAUAAUAACAACGCCGAAGUGGAUGCCCAUGCACGCGGUGGCCUGGGCA---UUGCCCAGGACUUUGGCAUGGGUGGA----- -------------...((((((.....))))))..(((((..........)))))........((((((((.((.(((..(((((((.---..)))))))))).))))))))))...----- ( -41.80, z-score = -2.13, R) >droVir3.scaffold_13047 9654295 101 - 19223366 -------------CUGGAUACGGAUUUUGUGACGGCGGCGACACCAACAACGCCGAAGUGGAUGCACAUGCACGCGGUGGCCUGGGCA---UUGCCCAGGACUUUGGCAUGGCCGGA----- -------------(((....))).........((((((.....))......((((((((.....(((.((....))))).(((((((.---..)))))))))))))))...))))..----- ( -38.20, z-score = -0.94, R) >droMoj3.scaffold_6540 26472080 101 - 34148556 -------------CUGGAUACGGAUUUUGUGACGGCGGCGAGACAAACAACGCCGAAGUGGAUGCACAUGCACGCGGUGGCCUGGGCA---UUGCCCAGGACUUUGGCAUGGCCGGA----- -------------(((....))).........((((((((..........))))............(((((.((.(((..(((((((.---..)))))))))).)))))))))))..----- ( -37.60, z-score = -1.23, R) >droGri2.scaffold_14906 11714824 101 - 14172833 -------------CUGGAUACGGAUUUUGUGACGGCGGCGACACCAACAACGCCGAAGUGGAUGCCCAUGCACGCGGUGGCCUGGGCA---UUGCCCAGGACUUUGGCAUGGCCGGA----- -------------((((....((..((..(..(((((.............)))))..)..))..))(((((.((.(((..(((((((.---..)))))))))).))))))).)))).----- ( -39.62, z-score = -0.82, R) >consensus _____________CUGGAUACGGAUUUCGGAACG_CGGCGACAGCAACAACGCCGAAGUGGAUGCCCAUGCACGCGGUGGCCUGGGCA___UUGCCCAGGACUUUGGCAUGGGCGGG_____ ..................(((.......)))....................((((..(((...((....)).)))......((((((......)))))).....)))).............. (-20.88 = -20.30 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:16 2011