| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,432,961 – 27,433,063 |
| Length | 102 |
| Max. P | 0.500000 |
| Location | 27,432,961 – 27,433,063 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 64.43 |
| Shannon entropy | 0.64845 |
| G+C content | 0.43133 |
| Mean single sequence MFE | -28.05 |
| Consensus MFE | -9.46 |
| Energy contribution | -9.80 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 27432961 102 + 27905053 AAUUGGAGA-AAAUUUCCUCCC--UAUAGAGGCUUC----UAUGUUUAUCGGCGUAAUUGC--UGGCCUCAAGUUAUCGCAUGGGCUUAAUUACGACUGUAGGCUGUAUUC ....((((.-.......)))).--.((((......)----)))(((((.(((((((((((.--.((((.((.((....)).)))))))))))))).))))))))....... ( -26.00, z-score = -0.81, R) >droEre2.scaffold_4820 9927629 94 - 10470090 AAUUGCAGA-ACAUUUCCUCCC--UAUAGACGGUUU----UGUGCUUAUCGCCGUAAUUGC--UAGCCUCGAGAUAUGGCAGGG-CUCAAUUACAGCUGUACUC------- ....(((((-((...((.....--....))..))))----)))...(((.((.(((((((.--.((((..(........)..))-))))))))).)).)))...------- ( -20.70, z-score = 0.22, R) >droYak2.chr3R 28369050 96 + 28832112 AAUGCCAGAGAAAUUCCCUUCU--UAUAGAGGGUUC----UGUGUUUAUCGGCGUAAUUGC--UAGCCUCGAGAUAUCGCAGGGGCUCAAUUACUGCUGUAUUC------- .....((.((((...(((((..--....))))))))----).)).....(((((((((((.--.((((((..(....)...))))))))))))).)))).....------- ( -30.10, z-score = -2.05, R) >droSec1.super_31 93451 106 + 568655 AAUGGGAGG-AAAUUUUCUCCC--UAUAGAGGGUUCAUUCUACGUUUAUCGGCGUAAUUGC--UGGCCUCAAGUUAUCGCAUGGGCUCAAUUACGGCCGUAGGCUGUAUUC ...((((((-(....)))))))--..(((((......))))).(((((.(((((((((((.--.((((.((.((....)).))))))))))))).)))))))))....... ( -36.00, z-score = -2.94, R) >droSim1.chr3R_random 1298578 106 + 1307089 AAUUGGAGG-AAAUGUUCUCCC--UAUAGAGGGUUCAUUCUACGUUUAUCGGCGUAAUUGC--UGGCCUCAAGUUAUCGCAUGGGCCCAAUUACGGCCGUAGGCUGUAUUC ....(((((-(....)))))).--..(((((......))))).(((((.(((((((((((.--.((((.((.((....)).))))))))))))).)))))))))....... ( -34.00, z-score = -1.87, R) >droPer1.super_0 9629244 107 - 11822988 -ACGUCAUUGUAAUUGCCUGCUGGCAUUGGAAUUUUACUGCACUUUAAUUAUACUUAUAGUCUUGUCCUAGACGGACAAUUAUAGUUUGAUCAUAGGUAAAUAAAUUC--- -.............((((....))))...((((((...(((.((...((((.(((.(((((..(((((.....))))))))))))).))))...)))))...))))))--- ( -21.50, z-score = -1.07, R) >consensus AAUGGCAGA_AAAUUUCCUCCC__UAUAGAGGGUUC____UACGUUUAUCGGCGUAAUUGC__UGGCCUCAAGUUAUCGCAUGGGCUCAAUUACGGCUGUAGGCUGUA___ ...............(((((........)))))................(((((((((((....(((((.............)))))))))))).))))............ ( -9.46 = -9.80 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:16 2011