| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,426,521 – 27,426,636 |
| Length | 115 |
| Max. P | 0.743008 |
| Location | 27,426,521 – 27,426,636 |
|---|---|
| Length | 115 |
| Sequences | 13 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 81.43 |
| Shannon entropy | 0.42877 |
| G+C content | 0.53153 |
| Mean single sequence MFE | -40.06 |
| Consensus MFE | -21.62 |
| Energy contribution | -21.14 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.743008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27426521 115 - 27905053 GAAGGAGAUCGGCGGCGACUUUUUCAAGUUCUACCAGCAGCUCAUCAAGCUGGAGGAACUGGAGAACCGCCUGGAGAUCCUGAUGUGCGACGUGAAGACCACGGUGAUCACGCCC ..((((..(((((((....(((((((.(((((.(((((..........))))).)))))))))))))))))..))..)))).........(((((..((....))..)))))... ( -41.70, z-score = -1.84, R) >anoGam1.chr2R 9046846 109 - 62725911 ------GAAUGCACUCGGGCUGUCGGAAAUAUUCAAAUCCGCCAUCUCGCUGGCCGAUCUCGAGAUGCGGCUGGAGAUACUGGCGUGCGAUGCGAGCUGCGCGAGCAUUCGCCCG ------.........(((((.((((((.....)).....(((((..((.(..(((((((....))).))))..).))...)))))..))))..(((.(((....))))))))))) ( -41.30, z-score = -0.23, R) >droGri2.scaffold_14906 11700544 115 + 14172833 GAAGGAGAUUGGCGGCGAUUUCUUCAAGUUCUUUCAGCACCUGAUCAAGCUCGAGGAGCUGGAGAAUCGUUUGGAGAUCCUGUUGUGCGAUGUGAAGACAACGGUGAUUACCCCA ...((........(((((((.(((((.(((((((.(((..........))).))))))))))))))))))).((.(((((((((((.(........)))))))).)))).)))). ( -37.30, z-score = -1.05, R) >droMoj3.scaffold_6540 26455287 115 + 34148556 UAAGCAAAUUGGUGGGGAUUUCUUUAAAUUCUAUCAGCAACUCAUUAAAUUGGAGGAACUGGAGAAUCGCUUAGAGAUCUUACUGUGCGAUGUCAAGACGACCGUGAUAACGCCA .........((((((((((((((....(((((.((((...(((.........)))...))))))))).....))))))))).....(((..(((.....)))))).....))))) ( -27.00, z-score = -0.59, R) >droVir3.scaffold_13047 9638017 115 + 19223366 GAAGGAGAUUGGCGGUGAUUUCUUCAAAUUCUAUCAACAGCUCAUCAAACUGGAGGAGCUGGAGAAUCGUUUGGAGAUAUUGCUGUGCGAUGUCAAGACGACGGUCAUAACGCCG ....((.((((((((..((.(((((((((....((..((((((.((......)).))))))..))...))))))))).))..)))).)))).)).......((((......)))) ( -39.50, z-score = -2.85, R) >droWil1.scaffold_181089 2956968 115 - 12369635 CAAGGAGAUUGGCGGCGAUUUCUUUAAGUUCUAUCAGCAAUUGAUUAAGCUGGAGGAACUGGAGAAUCGUCUCGAGAUCCUAUUGUGCGAUGUAAAGACAACAGUGAUAACACCA ..((((..((((.(((((((.(((((.(((((.(((((..........))))).)))))))))))))))))))))..))))(((((.(........)...))))).......... ( -35.20, z-score = -2.64, R) >droSim1.chr3R_random 1289090 115 - 1307089 GAAGGAGAUCGGCGGCGACUUCUUCAAGUUCUACCAGCAGCUCAUCAAGCUGGAGGAACUGGAGAACCGCCUGGAGAUCCUGAUGUGCGACGUGAAGACCACGGUGAUCACGCCC ..((((..(((((((....(((((((.(((((.(((((..........))))).)))))))))))))))))..))..)))).........(((((..((....))..)))))... ( -44.30, z-score = -2.25, R) >droSec1.super_31 86963 115 - 568655 GAAGGAGAUCGGCGGCGACUUCUUCAAGUUCUACCAGCAGCUCAUCAAGCUGGAGGAACUGGAGAACCGCCUGGAGAUCCUGAUGUGCGACGUGAAGACCACGGUGAUCACGCCC ..((((..(((((((....(((((((.(((((.(((((..........))))).)))))))))))))))))..))..)))).........(((((..((....))..)))))... ( -44.30, z-score = -2.25, R) >droYak2.chr3R 28362459 115 - 28832112 GAAGGAGAUCGGCGGCGACUUCUUCAAGUUCUACCAGCAGCUCAUCAAGCUGGAGGAACUGGAGAACCGCCUGGAGAUCCUGAUGUGCGACGUGAAGACCACGGUGAUUACGCCC ..((((..(((((((....(((((((.(((((.(((((..........))))).)))))))))))))))))..))..))))..........(((.....)))((((....)))). ( -42.90, z-score = -2.22, R) >droEre2.scaffold_4820 9921000 115 + 10470090 GAAGGAGAUCGGCGGCGACUUCUUCAAGUUCUACCAGCAGCUCAUCAAGCUGGAGGAACUGGAGAACCGCCUGGAGAUCCUGAUGUGCGACGUGAAGACCACGGUGAUUACGCCC ..((((..(((((((....(((((((.(((((.(((((..........))))).)))))))))))))))))..))..))))..........(((.....)))((((....)))). ( -42.90, z-score = -2.22, R) >droAna3.scaffold_12911 1679281 115 + 5364042 GAAGGAGAUCGGCGGCGACUUCUUCAAGUUCUACCAGCAGCUGAUCAAGCUGGAGGAGCUCGAGAACCGUCUGGAGAUCCUGCUGUGCGACGUGAAGACCACAGUGAUCACCCCA ...((.....(((((....(((((..((((((.(((((..........))))).)))))).)))))))))).((.((((..((((((.(.(.....).))))))))))).)))). ( -39.20, z-score = -0.47, R) >dp4.chr2 22428411 115 + 30794189 GAAGGAGAUUGGCGGCGAUUUCUUCAAGUUCUUCCAACAGCUGAUCAAGCUGGAGGAGCUGGAGAACCGCCUGGAGAUUCUGUUGUGCGACGUGAAGACCACCGUCAUCACGCCC ..........(((((((..(((((((.(((((((((...(((.....))))))))))))))))))).))))..........(((....)))((((.(((....))).))))))). ( -42.60, z-score = -1.90, R) >droPer1.super_0 9622727 115 + 11822988 GAAGGAGAUUGGCGGCGAUUUCUUCAAGUUCUUCCAACAGCUGAUCAAGCUGGAGGAGCUGGAGAACCGCCUGGAGAUUCUGUUGUGCGACGUGAAGACCACCGUCAUCACGCCC ..........(((((((..(((((((.(((((((((...(((.....))))))))))))))))))).))))..........(((....)))((((.(((....))).))))))). ( -42.60, z-score = -1.90, R) >consensus GAAGGAGAUUGGCGGCGACUUCUUCAAGUUCUACCAGCAGCUCAUCAAGCUGGAGGAACUGGAGAACCGCCUGGAGAUCCUGAUGUGCGACGUGAAGACCACGGUGAUCACGCCC ..((((..(((((((....(((((((..((((.(((..............)))))))..))))))))))))..))..)))).......(.(((((..((....))..))))).). (-21.62 = -21.14 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:13 2011