| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,405,209 – 27,405,314 |
| Length | 105 |
| Max. P | 0.935068 |
| Location | 27,405,209 – 27,405,314 |
|---|---|
| Length | 105 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 84.33 |
| Shannon entropy | 0.33441 |
| G+C content | 0.60714 |
| Mean single sequence MFE | -46.86 |
| Consensus MFE | -30.66 |
| Energy contribution | -30.78 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.935068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27405209 105 + 27905053 GCACUUGAGGUUUUUCGCCGCUUCUUCGGAUUGCUCGGCGCCGAGAU---GAUGUCCGUGGG---AGGCGGCGGCUUAAAAUCGGGCGGACAGAGUCCGCCCGCUGGACCC ((......(((((((((((((((((((((((..((((....))))..---...))))).)))---)))))))))...))))))((((((((...))))))))))....... ( -54.80, z-score = -3.51, R) >droSec1.super_31 65676 105 + 568655 GCACUUGAGGUUUUUCGCCGUUUCUUCGGAUUGCUCGGCGCCGAGAU---AAUGUCCGUGGG---AGGCGGCGGCUUAAAGUCGGGCGGACAAAGUCCGCCCGCUGGACCC ........(((((.(((((((((((((((((..((((....))))..---...))))).)))---))))))))).....((.(((((((((...)))))))))))))))). ( -53.30, z-score = -3.53, R) >droYak2.chr3R 28340200 105 + 28832112 GCACUUGAGGUUUUCCGCCGCUUCUUCGGAUUGCUCGGCGCCGAGAU---GAUGUCCGUAGG---AGGCGGCGGCUUAAAGUCGGGCGGACAAAGUCCGCCCGCUGGACCC ........(((((.(((((((((((((((((..((((....))))..---...))))).)))---))))))))).....((.(((((((((...)))))))))))))))). ( -58.90, z-score = -4.68, R) >droEre2.scaffold_4820 9899509 105 - 10470090 GCACUUGAGGUUUUUCGCCGCUUCUUCGGAUUGCUCGGCGCCGAGAU---GAUGUCCGUAGG---AGGCGGCGGCUUAAAGUCGGGCGGACACAGUCCGCCCGCUGGACCC ........(((((.(((((((((((((((((..((((....))))..---...))))).)))---))))))))).....((.(((((((((...)))))))))))))))). ( -56.80, z-score = -4.28, R) >droAna3.scaffold_12911 1658378 105 - 5364042 GCAUUAGAAGUUUUCCGCCGCUUUUUCGGAUUACUCGGCGCCGAGAU---GAUAUCCGACGG---CGGCGGCGGUUUGAAGUCGGGCGGACACAGUCCACCCGCUGGACCC ..............((((((((...((((((..((((....))))..---...)))))).))---)))))).((((...((.((((.((((...)))).)))))).)))). ( -47.00, z-score = -2.92, R) >dp4.chr2 22407154 105 - 30794189 GCAUUCGAAGUUUUCCGCCGCUUCUUGGGAUUGCUCGGCGCCGAGAU---GAUAUCCGACGG---AGGCGGCGGUUUGAAGUCAGGCGGACAGAGGCCGCCUGCUGGACCC ....(((((.....((((((((((((.((((..((((....))))..---...)))).).))---))))))))))))))((.(((((((.......)))))))))...... ( -47.80, z-score = -2.03, R) >droPer1.super_0 9601320 105 - 11822988 GCAUUCGAUGUUUUCCGCCGCUUCUUGGGAUUGCUCGGCGCCGAGAU---GAUAUCCGACGG---AGGCGGCGGUUUGAAGUCAGGCGGACAGAGGCCGCCUGCUGGACCC ((....(((.((..((((((((((((.((((..((((....))))..---...)))).).))---)))))))))...)).)))((((((.......))))))))....... ( -47.50, z-score = -2.01, R) >droWil1.scaffold_181089 2937111 105 + 12369635 GCAUUUGAGGUUUUUCGCCUCUUUUUCGGAUUACUCGGCGCCGAGAU---GAUAUCCGAUGG---AGGCGGCGGCUUGAAGUCAGGCGGACAUAGUCCGCCUGCUGGACCC ........(((((.((((((((...((((((..((((....))))..---...)))))).))---))))))........((.(((((((((...)))))))))))))))). ( -48.00, z-score = -3.64, R) >droMoj3.scaffold_6540 26435620 105 - 34148556 GCAUUCGAUGUUUUCCGCCGUUUCUUCGGAUUACUCGGCGCCGAGAU---AAUAUCCGUCGG---GGGCGGAGGUUUAAAAUCGGGCGGACAGAGGCCGCCCGCUGGACCC ((....(((.....((.((((..((.(((((..((((....))))..---...)))))..))---..)))).))......)))((((((.......))))))))....... ( -43.00, z-score = -0.98, R) >droGri2.scaffold_14906 11680280 105 - 14172833 GCAUUCGAUGUUUUUCGUCGCUUCUUUGGAUUACUCGGCGCCGAGAU---GAUAUCCGUCGG---AGGCGGUGGCUUAAAAUCAGGCGGACAUAGACCACCCGCUGGACCC ...((((((.....((..(((((((.(((((..((((....))))..---...)))))..))---)))))..))......))).(((((...........))))))))... ( -31.30, z-score = 0.38, R) >droVir3.scaffold_13047 9617322 105 - 19223366 GCAUUUGAUGUUUUCCGUCGUUUUUUCGGAUUACUCGGCGCCGAGAU---GAUAUCCGUCGG---UGGCGGCGGCUUAAAAUCAGGCGGACAGAGACCGCCCGCUGGACCC ((...((((.....((((((((....(((((..((((....))))..---...)))))....---.))))))))......))))(((((.......))))).))....... ( -36.60, z-score = -0.39, R) >anoGam1.chr2R 38442641 105 - 62725911 ACGUUCGACGUUUUCCUUCGCUUCUUCGGAUUGCUCGGGGCGGAUAUCGGGAGCUGCGGCGAUUCCGAGGGCGAUUUGAAAUCUGGCGGACAGAGUCCGGGUCCU------ ......((((.((((..((((..(((((((((((.((.(((...........))).)))))).)))))))))))...)))).)...(((((...))))).)))..------ ( -37.30, z-score = 0.68, R) >consensus GCAUUUGAGGUUUUCCGCCGCUUCUUCGGAUUGCUCGGCGCCGAGAU___GAUAUCCGUCGG___AGGCGGCGGCUUAAAGUCGGGCGGACAGAGUCCGCCCGCUGGACCC ((....((..((..((((((((((..(((((..((((....))))........)))))..))....))))))))...))..))((((((.......))))))))....... (-30.66 = -30.78 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:08 2011