| Sequence ID | dm3.chr3R |
|---|---|
| Location | 27,404,405 – 27,404,500 |
| Length | 95 |
| Max. P | 0.948477 |
| Location | 27,404,405 – 27,404,500 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 75.20 |
| Shannon entropy | 0.51599 |
| G+C content | 0.63628 |
| Mean single sequence MFE | -45.47 |
| Consensus MFE | -16.78 |
| Energy contribution | -16.55 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.52 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 27404405 95 - 27905053 GGGCAGAACUCGCCAAUGAACUCACUGCCUAUGGGUUCGCCAAUGGGCA---AUCCAAUUGGCAGCCCGUUGGGCCCUCCCUCGGGACCGGGCCCUGG----------- ((((.(....)(((((((((((((.......)))))))(((....))).---.....)))))).))))...(((((((((....)))..))))))...----------- ( -45.20, z-score = -2.39, R) >droVir3.scaffold_13047 9616512 95 + 19223366 GGACAGAAUUCGCCAAUGAACUCGCUGCCAAUGGGCUCGCCCAUGGGCA---AUCAAAUUGGCAGUCCACUGGGUCCAGGACCUGGGCCCGGGCCGGG----------- ((((.(....)((((((........((((.(((((....))))).))))---.....)))))).)))).((((((((((...))))))))))......----------- ( -45.52, z-score = -2.51, R) >droGri2.scaffold_14906 11679483 106 + 14172833 GGCCAGAACUCGCCAAUGAACUCGCUGCCCAUGGGCUCACCCAUGGGCA---ACCAGAUUGGCAGUCCACUGGGUCCCGGACCAGGACCAGGGCCCGGACCCGGACCGG ((((.(.(((.((((((...((.(.((((((((((....))))))))))---.).))))))))))).)...((((((.((.((........)))).)))))))).)).. ( -53.00, z-score = -2.96, R) >droMoj3.scaffold_6540 26434820 106 + 34148556 GGGCAAAACUCUCCUAUGAACUCGCUGCCAAUGGGUUCGCCUAUGGGCA---AUCAAAUUGGCAGUCCGCUAGGUCCCGGACCUGGACCUGGUCCUGGACCCGGCCCGG ((((...................(((((((((.((((.(((....))))---)))..)))))))))......(((((.(((((.......))))).)))))..)))).. ( -47.80, z-score = -3.03, R) >droWil1.scaffold_181089 2936325 92 - 12369635 GGUCAGAAUUCACCGAUGAAUUCAUUACCGAUGGGCUCUCCAAUGGGUAAUCAUCCCAUAGGUAGCCCAUUAGGCCCACCGCCCGGAGCUGG----------------- ((((.(((((((....)))))))......((((((((..((.(((((.......))))).)).)))))))).))))..((....))......----------------- ( -35.50, z-score = -2.86, R) >droPer1.super_0 9600524 99 + 11822988 GGCCAAAACUCGCCCAUGAAUUCGUUGCCGAUGGGCUCGCCGAUGGGUA---AUCCCAUUGGUAGUCCCCUUGGACCGCCUUCAGG---UGGUCCGGGGCCGCAG---- ((((.....(((.(.(((....))).).))).(((((.(((((((((..---..))))))))))))))..((((((((((....))---))))))))))))....---- ( -49.60, z-score = -3.62, R) >dp4.chr2 22406358 99 + 30794189 GGCCAGAACUCGCCCAUGAAUUCGUUGCCGAUGGGCUCGCCGAUGGGUA---AUCCCAUUGGUAGUCCCCUUGGACCGCCUUCAGG---UGGUCCGGGGCCGCAG---- (((..(((.(((....))).)))...)))...(((((.(((((((((..---..))))))))))))))((((((((((((....))---))))))))))......---- ( -51.20, z-score = -3.77, R) >droAna3.scaffold_12911 1657571 95 + 5364042 GGCCAGAACUCGCCUAUGAACUCGCUACCCAUGGGUUCGCCGAUGGGUA---ACCCAAUUGGAAGCCCGCUAGGACCUCCUUCCGGCCCAGGUCCGGG----------- (((........)))...........(((((((.((....)).)))))))---.(((....((....))....((((((((....))...)))))))))----------- ( -33.80, z-score = -0.25, R) >droEre2.scaffold_4820 9898705 95 + 10470090 GGCCAGAACUCGCCAAUGAACUCACUGCCCAUGGGCUCGCCGAUGGGCA---AUCCAAUUGGCAGCCCGUUGGGCCCUCCUUCGGGACCGGGCCCGGG----------- (((........))).............((((((((((.((((((((...---..)).))))))))))))).(((((((((....)))..)))))))))----------- ( -48.60, z-score = -2.80, R) >droYak2.chr3R 28339405 95 - 28832112 GGCCAGAACUCGCCAAUGAACUCACUGCCCAUGGGCUCGCCGAUGGGCA---AUCCAAUUGGCAGCCCGUUGGGCCCUCCCUCGGGUCCGGGCCCUGG----------- ..((((.....((((((........(((((((.((....)).)))))))---.....)))))).((((...((((((......)))))))))).))))----------- ( -46.82, z-score = -2.45, R) >droSec1.super_31 64872 95 - 568655 GGCCAGAACUCGCCAAUGAACUCACUGCCGAUGGGAUCGCCAAUGGGCA---AUCCAAUUGGCAGCCCGUUGGGCCCUCCCUCGGGACCGGGUCCUGG----------- ..((((.(((((............((((((((.((((.(((....))).---)))).))))))))((((..(((....))).))))..))))).))))----------- ( -44.20, z-score = -2.40, R) >droSim1.chr3R 27040275 95 - 27517382 GGCCAGAACUCGCCAAUGAAUUCACUGCCGAUGGGAUCGCCAAUGGGCA---AUCCAAUUGGCAGCCCGUUGGGCCCUCCCUCGGGACCGGGCCCUGG----------- (((........)))..........((((((((.((((.(((....))).---)))).)))))))).(((..(((((((((....)))..)))))))))----------- ( -44.40, z-score = -2.16, R) >consensus GGCCAGAACUCGCCAAUGAACUCACUGCCGAUGGGCUCGCCGAUGGGCA___AUCCAAUUGGCAGCCCGCUGGGCCCUCCCUCGGGACCGGGUCCGGG___________ ...........(((.((........((((.((.((....)).)).))))........)).)))......(((((.(((...........))).)))))........... (-16.78 = -16.55 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:00:07 2011