Locus 1233

Sequence ID dm3.chr2L
Location 9,365,674 – 9,365,741
Length 67
Max. P 0.650009
window1682

overview

Window 2

Location 9,365,674 – 9,365,741
Length 67
Sequences 5
Columns 67
Reading direction forward
Mean pairwise identity 93.43
Shannon entropy 0.11853
G+C content 0.35342
Mean single sequence MFE -15.70
Consensus MFE -11.80
Energy contribution -13.04
Covariance contribution 1.24
Combinations/Pair 1.05
Mean z-score -2.23
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.34
SVM RNA-class probability 0.650009
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 9365674 67 + 23011544
AAUUUGCGUGCGUGUGUGUAGUGAGUGAGAAGAGUUCAUUAAAGUUUCACGUGCGAAAUUAUAUAAA
(((((.((..((((....(((((((.........)))))))......))))..)))))))....... ( -16.60, z-score =  -2.50, R)
>droAna3.scaffold_12943 718548 67 + 5039921
AAUCUGCGUGCGUGUGUGUAAUGAGUGUGAAAAGUUCAUUAAAGUUUCACGUUCGAAAUUAUAUGAA
..........((((((.....(((((((((((..((....))..)))))))))))....)))))).. ( -11.90, z-score =  -0.63, R)
>droEre2.scaffold_4929 9978149 63 + 26641161
AAUUUGCG----UGUGUGUAGCGAGUGAGAAGAGUUCAUUAAAGUUUCACGUGCGAAAUUAUAUAAA
(((((.((----..((((.(((.((((((.....))))))...))).))))..)))))))....... ( -16.80, z-score =  -3.02, R)
>droSec1.super_3 4823057 67 + 7220098
AAUUUGCGUGCGUGUGUGUAGUGAGUGAGAAGAGUUCAUUAAAGUUUCACGUGCGAAAUUAUAUAAA
(((((.((..((((....(((((((.........)))))))......))))..)))))))....... ( -16.60, z-score =  -2.50, R)
>droSim1.chr2L 9143119 67 + 22036055
AAUUUGCGUGCGUGUGUGUAGUGAGUGAGAAGAGUUCAUUAAAGUUUCACGUGCGAAAUUAUAUAAA
(((((.((..((((....(((((((.........)))))))......))))..)))))))....... ( -16.60, z-score =  -2.50, R)
>consensus
AAUUUGCGUGCGUGUGUGUAGUGAGUGAGAAGAGUUCAUUAAAGUUUCACGUGCGAAAUUAUAUAAA
(((((.((((((((....(((((((.........)))))))......)))))))))))))....... (-11.80 = -13.04 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:03 2011